miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18768 3' -55.6 NC_004683.1 + 40206 0.66 0.682147
Target:  5'- uGCagAUUGGCGaUGgucgcGGCCgcGUCCGGCu -3'
miRNA:   3'- gUGggUAACCGC-AU-----UCGGa-CAGGCCG- -5'
18768 3' -55.6 NC_004683.1 + 53851 0.66 0.682147
Target:  5'- uCACCCGUgaugccguUGGCG--AGCCgugcaGUCCaGCu -3'
miRNA:   3'- -GUGGGUA--------ACCGCauUCGGa----CAGGcCG- -5'
18768 3' -55.6 NC_004683.1 + 13739 0.66 0.693005
Target:  5'- uGCCCAgUGGCG--AGCCcga-CGGCa -3'
miRNA:   3'- gUGGGUaACCGCauUCGGacagGCCG- -5'
18768 3' -55.6 NC_004683.1 + 940 0.66 0.693005
Target:  5'- aCACgCCAUUGGUG-GGGCC-GUCCuccagccgcuuGGCc -3'
miRNA:   3'- -GUG-GGUAACCGCaUUCGGaCAGG-----------CCG- -5'
18768 3' -55.6 NC_004683.1 + 13818 0.66 0.693005
Target:  5'- uGCCCGgcGGUGUuuggcagcgcAGGCCgcgcaCCGGCg -3'
miRNA:   3'- gUGGGUaaCCGCA----------UUCGGaca--GGCCG- -5'
18768 3' -55.6 NC_004683.1 + 40316 0.67 0.605398
Target:  5'- gCGCCUgcagcucGGCGcGGGCCUGcUCGGCg -3'
miRNA:   3'- -GUGGGuaa----CCGCaUUCGGACaGGCCG- -5'
18768 3' -55.6 NC_004683.1 + 13865 0.69 0.540347
Target:  5'- gGCCCGgcugacugGGC-UGAGCCggguucggGUUCGGCg -3'
miRNA:   3'- gUGGGUaa------CCGcAUUCGGa-------CAGGCCG- -5'
18768 3' -55.6 NC_004683.1 + 18300 0.69 0.519151
Target:  5'- uGCCCGUgGGCGaguUGAGCCgggcgacgaUGUCuaCGGCg -3'
miRNA:   3'- gUGGGUAaCCGC---AUUCGG---------ACAG--GCCG- -5'
18768 3' -55.6 NC_004683.1 + 52797 0.69 0.486978
Target:  5'- gACCCGUcgggcaccgcgcuUGGCGUAcAGCUguacCCGGCa -3'
miRNA:   3'- gUGGGUA-------------ACCGCAU-UCGGaca-GGCCG- -5'
18768 3' -55.6 NC_004683.1 + 27063 0.7 0.467731
Target:  5'- uGCCgAggUGGCc--GGCCUGcCCGGCg -3'
miRNA:   3'- gUGGgUa-ACCGcauUCGGACaGGCCG- -5'
18768 3' -55.6 NC_004683.1 + 31507 0.71 0.42855
Target:  5'- cCGCCgCcgUGGgGuUGAGCCUGUCacugguGGCg -3'
miRNA:   3'- -GUGG-GuaACCgC-AUUCGGACAGg-----CCG- -5'
18768 3' -55.6 NC_004683.1 + 24288 0.71 0.42855
Target:  5'- uCACCCcg-GGCGUcggaugagccGAGCUUGagCGGCa -3'
miRNA:   3'- -GUGGGuaaCCGCA----------UUCGGACagGCCG- -5'
18768 3' -55.6 NC_004683.1 + 11068 1.1 0.000737
Target:  5'- cCACCCAUUGGCGUAAGCCUGUCCGGCc -3'
miRNA:   3'- -GUGGGUAACCGCAUUCGGACAGGCCG- -5'
18768 3' -55.6 NC_004683.1 + 16217 0.66 0.721998
Target:  5'- aCGCCCAgucgUGGgugucgauguaguaCGgcAGCCgcacgCCGGCg -3'
miRNA:   3'- -GUGGGUa---ACC--------------GCauUCGGaca--GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.