miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18770 3' -52.8 NC_004683.1 + 12242 1.11 0.001408
Target:  5'- cUGCGACGGAUCAAACGACGGCUUGGCc -3'
miRNA:   3'- -ACGCUGCCUAGUUUGCUGCCGAACCG- -5'
18770 3' -52.8 NC_004683.1 + 12689 0.66 0.863163
Target:  5'- gGCGACGaAUCGcACGAgguuguCGGCgaguccgGGCa -3'
miRNA:   3'- aCGCUGCcUAGUuUGCU------GCCGaa-----CCG- -5'
18770 3' -52.8 NC_004683.1 + 12804 0.69 0.673765
Target:  5'- cGCuGGCGGAUaccCGGGCGauGCGGCgcugcUGGCc -3'
miRNA:   3'- aCG-CUGCCUA---GUUUGC--UGCCGa----ACCG- -5'
18770 3' -52.8 NC_004683.1 + 12988 0.66 0.853969
Target:  5'- aGUGGCuGcgCGAGCG-CGGCUUccugccgGGCg -3'
miRNA:   3'- aCGCUGcCuaGUUUGCuGCCGAA-------CCG- -5'
18770 3' -52.8 NC_004683.1 + 13463 0.67 0.800063
Target:  5'- cGCG-CaGGGU--GGCGGCGGCUUccagGGCg -3'
miRNA:   3'- aCGCuG-CCUAguUUGCUGCCGAA----CCG- -5'
18770 3' -52.8 NC_004683.1 + 14015 0.69 0.678179
Target:  5'- -aCGACGGggCGAAcaguuucucgguccuCGGCGGCaaGGCg -3'
miRNA:   3'- acGCUGCCuaGUUU---------------GCUGCCGaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 16753 0.68 0.749428
Target:  5'- cUGCGAgCGGuccuugacgGUCAccacguACGuCGGCUUGGUc -3'
miRNA:   3'- -ACGCU-GCC---------UAGUu-----UGCuGCCGAACCG- -5'
18770 3' -52.8 NC_004683.1 + 16930 0.66 0.863163
Target:  5'- cGCGACGacGAUC--GCGuACGGUUcGGUg -3'
miRNA:   3'- aCGCUGC--CUAGuuUGC-UGCCGAaCCG- -5'
18770 3' -52.8 NC_004683.1 + 17808 0.66 0.862339
Target:  5'- gGCGAugcCGGu---GAUGcccaucaGCGGCUUGGCg -3'
miRNA:   3'- aCGCU---GCCuaguUUGC-------UGCCGAACCG- -5'
18770 3' -52.8 NC_004683.1 + 18253 0.67 0.800063
Target:  5'- gGCGACGagccGGUgAccguGACGGCGGCUUcGGg -3'
miRNA:   3'- aCGCUGC----CUAgU----UUGCUGCCGAA-CCg -5'
18770 3' -52.8 NC_004683.1 + 18763 0.68 0.763976
Target:  5'- cGuCGugGGAggCGuuccucgccagcuugAACGACGGCaagGGCa -3'
miRNA:   3'- aC-GCugCCUa-GU---------------UUGCUGCCGaa-CCG- -5'
18770 3' -52.8 NC_004683.1 + 19061 0.67 0.806827
Target:  5'- gGUGACGGcAUCAcccacgacgccaccGACGGCGcGCcUGGa -3'
miRNA:   3'- aCGCUGCC-UAGU--------------UUGCUGC-CGaACCg -5'
18770 3' -52.8 NC_004683.1 + 19117 0.68 0.728242
Target:  5'- aUGCGcGCGGGUgGAguGCGACGGCa---- -3'
miRNA:   3'- -ACGC-UGCCUAgUU--UGCUGCCGaaccg -5'
18770 3' -52.8 NC_004683.1 + 19461 0.7 0.662704
Target:  5'- cGCGACGuGAgu-GACGuCGGCg-GGCa -3'
miRNA:   3'- aCGCUGC-CUaguUUGCuGCCGaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 20099 0.66 0.854817
Target:  5'- -uCGGCGGuAUC-GACGGCGGCUacaacgcGGUg -3'
miRNA:   3'- acGCUGCC-UAGuUUGCUGCCGAa------CCG- -5'
18770 3' -52.8 NC_004683.1 + 20400 0.7 0.651614
Target:  5'- aGCuGGCGGcgCAcccggggcggccAACGGCGGCaccGGCg -3'
miRNA:   3'- aCG-CUGCCuaGU------------UUGCUGCCGaa-CCG- -5'
18770 3' -52.8 NC_004683.1 + 20572 0.67 0.780268
Target:  5'- gGCGGgGcGUCugguGGCGGCGGUgcGGCg -3'
miRNA:   3'- aCGCUgCcUAGu---UUGCUGCCGaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 21072 0.7 0.618275
Target:  5'- cGgGACGG-UC-GGCGACGGUgaccagGGCa -3'
miRNA:   3'- aCgCUGCCuAGuUUGCUGCCGaa----CCG- -5'
18770 3' -52.8 NC_004683.1 + 21551 0.75 0.39065
Target:  5'- -uCGACGuGAUCcugcuGGGCGGCGGCggUGGCg -3'
miRNA:   3'- acGCUGC-CUAG-----UUUGCUGCCGa-ACCG- -5'
18770 3' -52.8 NC_004683.1 + 21606 0.77 0.291563
Target:  5'- cGCGugGGGU--GAgGGCGGCUggGGCg -3'
miRNA:   3'- aCGCugCCUAguUUgCUGCCGAa-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.