miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18770 3' -52.8 NC_004683.1 + 276 0.72 0.51882
Target:  5'- cGCGACGGugGUCAaggagcuGACcGCGGCcgGGCg -3'
miRNA:   3'- aCGCUGCC--UAGU-------UUGcUGCCGaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 323 0.67 0.780267
Target:  5'- cGCcGCGGG-CAgcAGCGGCGGCaucgcGGCg -3'
miRNA:   3'- aCGcUGCCUaGU--UUGCUGCCGaa---CCG- -5'
18770 3' -52.8 NC_004683.1 + 420 0.77 0.284257
Target:  5'- gGUGAUGGcgCAGGCGGUGGCU-GGCg -3'
miRNA:   3'- aCGCUGCCuaGUUUGCUGCCGAaCCG- -5'
18770 3' -52.8 NC_004683.1 + 1404 0.69 0.705575
Target:  5'- gGCGAUcgaGGAcgccccgcugaucUCGAAaGACGGCUgGGCg -3'
miRNA:   3'- aCGCUG---CCU-------------AGUUUgCUGCCGAaCCG- -5'
18770 3' -52.8 NC_004683.1 + 1744 0.67 0.780268
Target:  5'- gGCGACGaGGUgaCAAACGGCGcg--GGCa -3'
miRNA:   3'- aCGCUGC-CUA--GUUUGCUGCcgaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 2446 0.68 0.770129
Target:  5'- uUGCGACGcaggcguAUCAGGCGAaCGGUccGGUg -3'
miRNA:   3'- -ACGCUGCc------UAGUUUGCU-GCCGaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 2751 0.72 0.498773
Target:  5'- cGCGGCGGccgcggCGAgcucgGCGGCGGCcaacucggUUGGCg -3'
miRNA:   3'- aCGCUGCCua----GUU-----UGCUGCCG--------AACCG- -5'
18770 3' -52.8 NC_004683.1 + 3736 0.68 0.749429
Target:  5'- -aCGACGGccUCAcccuCGACGGCUacGGCg -3'
miRNA:   3'- acGCUGCCu-AGUuu--GCUGCCGAa-CCG- -5'
18770 3' -52.8 NC_004683.1 + 3760 0.66 0.840972
Target:  5'- cGUGaACGGGgccugccgcacacucUCcAGCGGCGGCcgGGCc -3'
miRNA:   3'- aCGC-UGCCU---------------AGuUUGCUGCCGaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 3976 0.72 0.541337
Target:  5'- gGCGAUcgGGAUCGAGCcgaucaugggguGGCGGCcgUGGUc -3'
miRNA:   3'- aCGCUG--CCUAGUUUG------------CUGCCGa-ACCG- -5'
18770 3' -52.8 NC_004683.1 + 5827 0.66 0.866433
Target:  5'- gGCGGCGGugcccgCGAGCG-CGGUgacgaugcccgugGGCu -3'
miRNA:   3'- aCGCUGCCua----GUUUGCuGCCGaa-----------CCG- -5'
18770 3' -52.8 NC_004683.1 + 6892 0.66 0.871264
Target:  5'- cGCGACGGcgCGAucguCGucACGGCUacccacGGUu -3'
miRNA:   3'- aCGCUGCCuaGUUu---GC--UGCCGAa-----CCG- -5'
18770 3' -52.8 NC_004683.1 + 7327 0.66 0.871264
Target:  5'- cGCGGCGGugcuggcagcCAAGCcgGACGGUgagUUGGUc -3'
miRNA:   3'- aCGCUGCCua--------GUUUG--CUGCCG---AACCG- -5'
18770 3' -52.8 NC_004683.1 + 7486 0.68 0.770129
Target:  5'- cGUGACGaucaugugCAAGCGGCaGGC-UGGCu -3'
miRNA:   3'- aCGCUGCcua-----GUUUGCUG-CCGaACCG- -5'
18770 3' -52.8 NC_004683.1 + 8093 0.67 0.800063
Target:  5'- -uCGACGGcgCcGACGACcccgaGGCU-GGCa -3'
miRNA:   3'- acGCUGCCuaGuUUGCUG-----CCGAaCCG- -5'
18770 3' -52.8 NC_004683.1 + 8159 0.69 0.716415
Target:  5'- gGCGccgucgaGCGGGUCAccucacagAACGGCaGCUcGGCa -3'
miRNA:   3'- aCGC-------UGCCUAGU--------UUGCUGcCGAaCCG- -5'
18770 3' -52.8 NC_004683.1 + 9576 0.68 0.749428
Target:  5'- -cCGGCGGcAUCAAcUGugGGUUcGGCa -3'
miRNA:   3'- acGCUGCC-UAGUUuGCugCCGAaCCG- -5'
18770 3' -52.8 NC_004683.1 + 10739 0.67 0.832026
Target:  5'- cGCGGCGGGccaAGACG-CGGCgaacgaguucgucGGCg -3'
miRNA:   3'- aCGCUGCCUag-UUUGCuGCCGaa-----------CCG- -5'
18770 3' -52.8 NC_004683.1 + 10800 0.67 0.809698
Target:  5'- cUGCGGCucGGAUCAGcGgGAgGGCcaaucggaUUGGCg -3'
miRNA:   3'- -ACGCUG--CCUAGUU-UgCUgCCG--------AACCG- -5'
18770 3' -52.8 NC_004683.1 + 11688 0.69 0.706663
Target:  5'- --aGACGGAUgAAGCGACGggagcGCUgcagcGGCa -3'
miRNA:   3'- acgCUGCCUAgUUUGCUGC-----CGAa----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.