Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18770 | 3' | -52.8 | NC_004683.1 | + | 12242 | 1.11 | 0.001408 |
Target: 5'- cUGCGACGGAUCAAACGACGGCUUGGCc -3' miRNA: 3'- -ACGCUGCCUAGUUUGCUGCCGAACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 420 | 0.77 | 0.284257 |
Target: 5'- gGUGAUGGcgCAGGCGGUGGCU-GGCg -3' miRNA: 3'- aCGCUGCCuaGUUUGCUGCCGAaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 42027 | 0.77 | 0.284257 |
Target: 5'- gGCcaGGCGGGUCGGGCaACGGCgagGGCa -3' miRNA: 3'- aCG--CUGCCUAGUUUGcUGCCGaa-CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 50918 | 0.77 | 0.291563 |
Target: 5'- cGCGACGG-UCucGCGACGGCUc-GCg -3' miRNA: 3'- aCGCUGCCuAGuuUGCUGCCGAacCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 21606 | 0.77 | 0.291563 |
Target: 5'- cGCGugGGGU--GAgGGCGGCUggGGCg -3' miRNA: 3'- aCGCugCCUAguUUgCUGCCGAa-CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 21551 | 0.75 | 0.39065 |
Target: 5'- -uCGACGuGAUCcugcuGGGCGGCGGCggUGGCg -3' miRNA: 3'- acGCUGC-CUAG-----UUUGCUGCCGa-ACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 24519 | 0.75 | 0.39065 |
Target: 5'- uUGCGGCGc-UCGGuggcCGGCGGCUUGGUc -3' miRNA: 3'- -ACGCUGCcuAGUUu---GCUGCCGAACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 54063 | 0.74 | 0.41863 |
Target: 5'- cGCGACGGcgCcuccGCGGUGaGCUUGGCg -3' miRNA: 3'- aCGCUGCCuaGuu--UGCUGC-CGAACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 32931 | 0.73 | 0.467852 |
Target: 5'- gGUGGgGGAUCGGGCGGCGuuggaUUGGCc -3' miRNA: 3'- aCGCUgCCUAGUUUGCUGCcg---AACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 41837 | 0.73 | 0.488361 |
Target: 5'- gGCGGCGGuAUCGAcgcGCGGguaggucauCGGCUcgGGCa -3' miRNA: 3'- aCGCUGCC-UAGUU---UGCU---------GCCGAa-CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 34921 | 0.72 | 0.497727 |
Target: 5'- uUGCGGCgcuggcaGGGUCAuccguuGCGACGGCcucGGCc -3' miRNA: 3'- -ACGCUG-------CCUAGUu-----UGCUGCCGaa-CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 2751 | 0.72 | 0.498773 |
Target: 5'- cGCGGCGGccgcggCGAgcucgGCGGCGGCcaacucggUUGGCg -3' miRNA: 3'- aCGCUGCCua----GUU-----UGCUGCCG--------AACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 25863 | 0.72 | 0.509283 |
Target: 5'- cGCGACGGcu--GGCuGCGGCUcGGCg -3' miRNA: 3'- aCGCUGCCuaguUUGcUGCCGAaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 276 | 0.72 | 0.51882 |
Target: 5'- cGCGACGGugGUCAaggagcuGACcGCGGCcgGGCg -3' miRNA: 3'- aCGCUGCC--UAGU-------UUGcUGCCGaaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 56099 | 0.72 | 0.530571 |
Target: 5'- cGuCGACGGAgaCGAagucgGCGGCGGUgguggUGGCg -3' miRNA: 3'- aC-GCUGCCUa-GUU-----UGCUGCCGa----ACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 3976 | 0.72 | 0.541337 |
Target: 5'- gGCGAUcgGGAUCGAGCcgaucaugggguGGCGGCcgUGGUc -3' miRNA: 3'- aCGCUG--CCUAGUUUG------------CUGCCGa-ACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 25461 | 0.71 | 0.552175 |
Target: 5'- gGCGAUGGAUC-AGCGcCGGaaugcGGCg -3' miRNA: 3'- aCGCUGCCUAGuUUGCuGCCgaa--CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 40564 | 0.71 | 0.57294 |
Target: 5'- gGUGAC-GAUCAgcagccugaucucGAUGGCGGCUguccUGGCa -3' miRNA: 3'- aCGCUGcCUAGU-------------UUGCUGCCGA----ACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 53623 | 0.71 | 0.578436 |
Target: 5'- cUGCGGCGcGAUCAGgcccgccgcgaccugGCcGCGGCUgaGGCu -3' miRNA: 3'- -ACGCUGC-CUAGUU---------------UGcUGCCGAa-CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 23249 | 0.7 | 0.618275 |
Target: 5'- gGUGGCgGGGUCGGugGAuCGGUggGGUc -3' miRNA: 3'- aCGCUG-CCUAGUUugCU-GCCGaaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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