miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18770 3' -52.8 NC_004683.1 + 11688 0.69 0.706663
Target:  5'- --aGACGGAUgAAGCGACGggagcGCUgcagcGGCa -3'
miRNA:   3'- acgCUGCCUAgUUUGCUGC-----CGAa----CCG- -5'
18770 3' -52.8 NC_004683.1 + 20400 0.7 0.651614
Target:  5'- aGCuGGCGGcgCAcccggggcggccAACGGCGGCaccGGCg -3'
miRNA:   3'- aCG-CUGCCuaGU------------UUGCUGCCGaa-CCG- -5'
18770 3' -52.8 NC_004683.1 + 29642 0.7 0.659379
Target:  5'- -uCGACGGAUaCGAGCccgacaauggcccuGACGGCUugcUGGUa -3'
miRNA:   3'- acGCUGCCUA-GUUUG--------------CUGCCGA---ACCG- -5'
18770 3' -52.8 NC_004683.1 + 41377 0.7 0.661596
Target:  5'- gUGCGACacGAUCGAcgaguacccgucgGCuGGCGGCgUGGCu -3'
miRNA:   3'- -ACGCUGc-CUAGUU-------------UG-CUGCCGaACCG- -5'
18770 3' -52.8 NC_004683.1 + 47582 0.7 0.662704
Target:  5'- cUGCGACGGcugCG--UGGCGGCguucgGGCc -3'
miRNA:   3'- -ACGCUGCCua-GUuuGCUGCCGaa---CCG- -5'
18770 3' -52.8 NC_004683.1 + 38820 0.7 0.662704
Target:  5'- cGCGACGaGUUGgacGACGACGGUUucgaggucgUGGCc -3'
miRNA:   3'- aCGCUGCcUAGU---UUGCUGCCGA---------ACCG- -5'
18770 3' -52.8 NC_004683.1 + 12804 0.69 0.673765
Target:  5'- cGCuGGCGGAUaccCGGGCGauGCGGCgcugcUGGCc -3'
miRNA:   3'- aCG-CUGCCUA---GUUUGC--UGCCGa----ACCG- -5'
18770 3' -52.8 NC_004683.1 + 14015 0.69 0.678179
Target:  5'- -aCGACGGggCGAAcaguuucucgguccuCGGCGGCaaGGCg -3'
miRNA:   3'- acGCUGCCuaGUUU---------------GCUGCCGaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 1404 0.69 0.705575
Target:  5'- gGCGAUcgaGGAcgccccgcugaucUCGAAaGACGGCUgGGCg -3'
miRNA:   3'- aCGCUG---CCU-------------AGUUUgCUGCCGAaCCG- -5'
18770 3' -52.8 NC_004683.1 + 23692 0.7 0.640505
Target:  5'- cGcCGACGGGuucUCGAcguuccgccGCGGCGGCaccGGCg -3'
miRNA:   3'- aC-GCUGCCU---AGUU---------UGCUGCCGaa-CCG- -5'
18770 3' -52.8 NC_004683.1 + 53623 0.71 0.578436
Target:  5'- cUGCGGCGcGAUCAGgcccgccgcgaccugGCcGCGGCUgaGGCu -3'
miRNA:   3'- -ACGCUGC-CUAGUU---------------UGcUGCCGAa-CCG- -5'
18770 3' -52.8 NC_004683.1 + 40564 0.71 0.57294
Target:  5'- gGUGAC-GAUCAgcagccugaucucGAUGGCGGCUguccUGGCa -3'
miRNA:   3'- aCGCUGcCUAGU-------------UUGCUGCCGA----ACCG- -5'
18770 3' -52.8 NC_004683.1 + 42027 0.77 0.284257
Target:  5'- gGCcaGGCGGGUCGGGCaACGGCgagGGCa -3'
miRNA:   3'- aCG--CUGCCUAGUUUGcUGCCGaa-CCG- -5'
18770 3' -52.8 NC_004683.1 + 21606 0.77 0.291563
Target:  5'- cGCGugGGGU--GAgGGCGGCUggGGCg -3'
miRNA:   3'- aCGCugCCUAguUUgCUGCCGAa-CCG- -5'
18770 3' -52.8 NC_004683.1 + 21551 0.75 0.39065
Target:  5'- -uCGACGuGAUCcugcuGGGCGGCGGCggUGGCg -3'
miRNA:   3'- acGCUGC-CUAG-----UUUGCUGCCGa-ACCG- -5'
18770 3' -52.8 NC_004683.1 + 32931 0.73 0.467852
Target:  5'- gGUGGgGGAUCGGGCGGCGuuggaUUGGCc -3'
miRNA:   3'- aCGCUgCCUAGUUUGCUGCcg---AACCG- -5'
18770 3' -52.8 NC_004683.1 + 34921 0.72 0.497727
Target:  5'- uUGCGGCgcuggcaGGGUCAuccguuGCGACGGCcucGGCc -3'
miRNA:   3'- -ACGCUG-------CCUAGUu-----UGCUGCCGaa-CCG- -5'
18770 3' -52.8 NC_004683.1 + 2751 0.72 0.498773
Target:  5'- cGCGGCGGccgcggCGAgcucgGCGGCGGCcaacucggUUGGCg -3'
miRNA:   3'- aCGCUGCCua----GUU-----UGCUGCCG--------AACCG- -5'
18770 3' -52.8 NC_004683.1 + 25863 0.72 0.509283
Target:  5'- cGCGACGGcu--GGCuGCGGCUcGGCg -3'
miRNA:   3'- aCGCUGCCuaguUUGcUGCCGAaCCG- -5'
18770 3' -52.8 NC_004683.1 + 276 0.72 0.51882
Target:  5'- cGCGACGGugGUCAaggagcuGACcGCGGCcgGGCg -3'
miRNA:   3'- aCGCUGCC--UAGU-------UUGcUGCCGaaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.