Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18770 | 3' | -52.8 | NC_004683.1 | + | 52469 | 0.66 | 0.871264 |
Target: 5'- cGCGACaucaccacgcaGGGUCucGCGcGCuGGCUcGGCa -3' miRNA: 3'- aCGCUG-----------CCUAGuuUGC-UG-CCGAaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 23619 | 0.66 | 0.863163 |
Target: 5'- cGCGAgaaguucaCGGA-CAgcAGCGAucuCGGCUUGGg -3' miRNA: 3'- aCGCU--------GCCUaGU--UUGCU---GCCGAACCg -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 17808 | 0.66 | 0.862339 |
Target: 5'- gGCGAugcCGGu---GAUGcccaucaGCGGCUUGGCg -3' miRNA: 3'- aCGCU---GCCuaguUUGC-------UGCCGAACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 40788 | 0.66 | 0.871264 |
Target: 5'- cGCGACcGAcgcgcUCGc-CGACGGCgaGGCc -3' miRNA: 3'- aCGCUGcCU-----AGUuuGCUGCCGaaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 41373 | 0.66 | 0.83742 |
Target: 5'- cGCGGugaggcCGGGUagcaGAAUGGCGGC--GGCg -3' miRNA: 3'- aCGCU------GCCUAg---UUUGCUGCCGaaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 43483 | 0.66 | 0.846233 |
Target: 5'- gGCGuagagcCGGAUCGccUGGCGGUUgcGGCg -3' miRNA: 3'- aCGCu-----GCCUAGUuuGCUGCCGAa-CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 3760 | 0.66 | 0.840972 |
Target: 5'- cGUGaACGGGgccugccgcacacucUCcAGCGGCGGCcgGGCc -3' miRNA: 3'- aCGC-UGCCU---------------AGuUUGCUGCCGaaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 56559 | 0.66 | 0.846233 |
Target: 5'- aUGCGuCGGGaccugCGguuGAUGACGGUcgGGCc -3' miRNA: 3'- -ACGCuGCCUa----GU---UUGCUGCCGaaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 7327 | 0.66 | 0.871264 |
Target: 5'- cGCGGCGGugcuggcagcCAAGCcgGACGGUgagUUGGUc -3' miRNA: 3'- aCGCUGCCua--------GUUUG--CUGCCG---AACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 24062 | 0.66 | 0.873645 |
Target: 5'- gGCGugGuGAUCGcgccgaggggcacguAGCcgugcucGACGaGCUUGGCc -3' miRNA: 3'- aCGCugC-CUAGU---------------UUG-------CUGC-CGAACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 6892 | 0.66 | 0.871264 |
Target: 5'- cGCGACGGcgCGAucguCGucACGGCUacccacGGUu -3' miRNA: 3'- aCGCUGCCuaGUUu---GC--UGCCGAa-----CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 37103 | 0.66 | 0.871264 |
Target: 5'- gGCGGCGuGUCGGuaaACGGCUguguguugcUGGCg -3' miRNA: 3'- aCGCUGCcUAGUUugcUGCCGA---------ACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 45969 | 0.66 | 0.83742 |
Target: 5'- gGCG-CGGGUCAAucuGCGACaGaucGGCg -3' miRNA: 3'- aCGCuGCCUAGUU---UGCUGcCgaaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 12988 | 0.66 | 0.853969 |
Target: 5'- aGUGGCuGcgCGAGCG-CGGCUUccugccgGGCg -3' miRNA: 3'- aCGCUGcCuaGUUUGCuGCCGAA-------CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 27912 | 0.66 | 0.846233 |
Target: 5'- cUGCGACGcugCGAAUG-CGGaauCUUGGCc -3' miRNA: 3'- -ACGCUGCcuaGUUUGCuGCC---GAACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 48227 | 0.66 | 0.83742 |
Target: 5'- cGCGGCGGGaacaaaUCGcgccgaaaugAGCGAcgccgcCGGCgagUGGCu -3' miRNA: 3'- aCGCUGCCU------AGU----------UUGCU------GCCGa--ACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 29045 | 0.66 | 0.863163 |
Target: 5'- aUGUGugGGAcuUCGggaGACGcUGGCgccgUGGUa -3' miRNA: 3'- -ACGCugCCU--AGU---UUGCuGCCGa---ACCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 20099 | 0.66 | 0.854817 |
Target: 5'- -uCGGCGGuAUC-GACGGCGGCUacaacgcGGUg -3' miRNA: 3'- acGCUGCC-UAGuUUGCUGCCGAa------CCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 42314 | 0.66 | 0.860685 |
Target: 5'- cGCGGCGuggguguucgccguGAUC--GCGugGGUUgGGCu -3' miRNA: 3'- aCGCUGC--------------CUAGuuUGCugCCGAaCCG- -5' |
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18770 | 3' | -52.8 | NC_004683.1 | + | 37269 | 0.66 | 0.863163 |
Target: 5'- cGCGGCGcg-CAAACGcCGGauuguCUUGGUg -3' miRNA: 3'- aCGCUGCcuaGUUUGCuGCC-----GAACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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