miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18771 3' -58 NC_004683.1 + 36803 0.66 0.629694
Target:  5'- aGUGGGagcaucUGCGUcaCCGGCUCGuaGCGCUGc -3'
miRNA:   3'- gCGCCU------AUGCGc-GGCUGAGC--UGCGAC- -5'
18771 3' -58 NC_004683.1 + 23972 0.66 0.619018
Target:  5'- -aCGGcUACGUGCCc-CUCGGCGCg- -3'
miRNA:   3'- gcGCCuAUGCGCGGcuGAGCUGCGac -5'
18771 3' -58 NC_004683.1 + 56153 0.66 0.619018
Target:  5'- uGCGGugccaGCGCCaGACgCGGCGgUGg -3'
miRNA:   3'- gCGCCuaug-CGCGG-CUGaGCUGCgAC- -5'
18771 3' -58 NC_004683.1 + 53728 0.66 0.617951
Target:  5'- uGCGGuaaGUGCaCGCCGAC-CGGCccgaucaGCUGg -3'
miRNA:   3'- gCGCC---UAUGcGCGGCUGaGCUG-------CGAC- -5'
18771 3' -58 NC_004683.1 + 51121 0.66 0.617951
Target:  5'- gCGCGGccgGCGCgaagggccgcaagGCCGACUgGACGg-- -3'
miRNA:   3'- -GCGCCua-UGCG-------------CGGCUGAgCUGCgac -5'
18771 3' -58 NC_004683.1 + 39884 0.66 0.608353
Target:  5'- gGCGGAUGCGCugcggguugGCCGGa-CGACGg-- -3'
miRNA:   3'- gCGCCUAUGCG---------CGGCUgaGCUGCgac -5'
18771 3' -58 NC_004683.1 + 12340 0.66 0.608353
Target:  5'- gCGCGcaacaGCGUCGAgUCGGCGCg- -3'
miRNA:   3'- -GCGCcuaugCGCGGCUgAGCUGCGac -5'
18771 3' -58 NC_004683.1 + 7053 0.66 0.597708
Target:  5'- aCGUcuGG--GCGCGCCGGC-CGACgaGCUGc -3'
miRNA:   3'- -GCG--CCuaUGCGCGGCUGaGCUG--CGAC- -5'
18771 3' -58 NC_004683.1 + 13610 0.66 0.597708
Target:  5'- uGCGGGccaGCuCGCCGGCaUCGGCGUc- -3'
miRNA:   3'- gCGCCUa--UGcGCGGCUG-AGCUGCGac -5'
18771 3' -58 NC_004683.1 + 42914 0.66 0.597708
Target:  5'- aGCGGAcggUACGCcgucggagaaGCCGACcgCGACGg-- -3'
miRNA:   3'- gCGCCU---AUGCG----------CGGCUGa-GCUGCgac -5'
18771 3' -58 NC_004683.1 + 28680 0.66 0.596645
Target:  5'- cCGCGGAggccUGCccaGCGCCGGCuucagaucccgugUCGACGagcaUGg -3'
miRNA:   3'- -GCGCCU----AUG---CGCGGCUG-------------AGCUGCg---AC- -5'
18771 3' -58 NC_004683.1 + 40190 0.66 0.58709
Target:  5'- uCGCGGc--CGCGuCCGGCUgGucugucaaggcGCGCUGg -3'
miRNA:   3'- -GCGCCuauGCGC-GGCUGAgC-----------UGCGAC- -5'
18771 3' -58 NC_004683.1 + 40548 0.66 0.58709
Target:  5'- gGCGGugugcACGCGCCGACacUCuGCGgUGc -3'
miRNA:   3'- gCGCCua---UGCGCGGCUG--AGcUGCgAC- -5'
18771 3' -58 NC_004683.1 + 2750 0.66 0.576507
Target:  5'- gCGCGGcgGcCGCGgCGAgCUCGGCGg-- -3'
miRNA:   3'- -GCGCCuaU-GCGCgGCU-GAGCUGCgac -5'
18771 3' -58 NC_004683.1 + 5242 0.66 0.576507
Target:  5'- gGCGGcgGCGCGCaCG--UUGuCGCUGg -3'
miRNA:   3'- gCGCCuaUGCGCG-GCugAGCuGCGAC- -5'
18771 3' -58 NC_004683.1 + 14395 0.66 0.572286
Target:  5'- aCGCaGGAgcugaccuugguccUGCGCGCCGACaacggguUCuGGCGCa- -3'
miRNA:   3'- -GCG-CCU--------------AUGCGCGGCUG-------AG-CUGCGac -5'
18771 3' -58 NC_004683.1 + 47102 0.67 0.565968
Target:  5'- cCGuUGGccaucaucGUGCGCGCCGGCUCGGuacCGgUGu -3'
miRNA:   3'- -GC-GCC--------UAUGCGCGGCUGAGCU---GCgAC- -5'
18771 3' -58 NC_004683.1 + 18201 0.67 0.555479
Target:  5'- uGCGG-UAgGUGCCGGCggCGACcGCg- -3'
miRNA:   3'- gCGCCuAUgCGCGGCUGa-GCUG-CGac -5'
18771 3' -58 NC_004683.1 + 24777 0.67 0.552343
Target:  5'- uCGCGGcgGCGCGCggccauggccucgaUGACgUCGGgGUUGg -3'
miRNA:   3'- -GCGCCuaUGCGCG--------------GCUG-AGCUgCGAC- -5'
18771 3' -58 NC_004683.1 + 52255 0.67 0.545047
Target:  5'- gCGCGGcaccaAgGCGCaCGAgCUCGACGCc- -3'
miRNA:   3'- -GCGCCua---UgCGCG-GCU-GAGCUGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.