miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18775 3' -59.7 NC_004683.1 + 15109 1.09 0.00047
Target:  5'- cCGAUGCCGCGGUAGUCCGCGCCGAGGc -3'
miRNA:   3'- -GCUACGGCGCCAUCAGGCGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 10495 0.86 0.023284
Target:  5'- gCGAUGCUGCGGgccGGcUUCGCGCCGAGGa -3'
miRNA:   3'- -GCUACGGCGCCa--UC-AGGCGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 24067 0.77 0.104356
Target:  5'- gCGGUGgCGUGGUGa-UCGCGCCGAGGg -3'
miRNA:   3'- -GCUACgGCGCCAUcaGGCGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 21244 0.77 0.107213
Target:  5'- uCGGUGCCGacaccGUGGUCCGCGgCCGGGa -3'
miRNA:   3'- -GCUACGGCgc---CAUCAGGCGC-GGCUCc -5'
18775 3' -59.7 NC_004683.1 + 52321 0.74 0.164007
Target:  5'- uGGUGCCGCGccGGcCCGgguCGCCGAGGc -3'
miRNA:   3'- gCUACGGCGCcaUCaGGC---GCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 3438 0.72 0.234512
Target:  5'- aCGcgGCCGacauccaGaaGGUCCGCGCCGAGa -3'
miRNA:   3'- -GCuaCGGCg------CcaUCAGGCGCGGCUCc -5'
18775 3' -59.7 NC_004683.1 + 38905 0.72 0.23686
Target:  5'- gGAUGCCGCGGaaugcucgucucugAGccuguuUCCGCGUCGAGcGg -3'
miRNA:   3'- gCUACGGCGCCa-------------UC------AGGCGCGGCUC-C- -5'
18775 3' -59.7 NC_004683.1 + 23809 0.71 0.258884
Target:  5'- uCGgcGCCGgGGUGGUgCCGCcGCCGGu- -3'
miRNA:   3'- -GCuaCGGCgCCAUCA-GGCG-CGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 24477 0.71 0.265292
Target:  5'- aCGAUcGCCGCGGUGG-CCuCGUCGAa- -3'
miRNA:   3'- -GCUA-CGGCGCCAUCaGGcGCGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 41050 0.71 0.278492
Target:  5'- gCGAUGCgCGCGGccaGGUCgGCgugGCCGAcGGg -3'
miRNA:   3'- -GCUACG-GCGCCa--UCAGgCG---CGGCU-CC- -5'
18775 3' -59.7 NC_004683.1 + 4918 0.7 0.321216
Target:  5'- aCGAgGCUGuCGaac-UCCGCGCCGAGGg -3'
miRNA:   3'- -GCUaCGGC-GCcaucAGGCGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 21841 0.7 0.321216
Target:  5'- uCGGUgGCCGCGGUcguugaaccaccGGUCUGC-CCGcGGg -3'
miRNA:   3'- -GCUA-CGGCGCCA------------UCAGGCGcGGCuCC- -5'
18775 3' -59.7 NC_004683.1 + 49051 0.7 0.336507
Target:  5'- cCGAUGCaCGCGcccgaaugGGUcaCCGCGCCGcGGg -3'
miRNA:   3'- -GCUACG-GCGCca------UCA--GGCGCGGCuCC- -5'
18775 3' -59.7 NC_004683.1 + 42576 0.69 0.34435
Target:  5'- cCGAgcgcGCCGCGGcGGUCgGgGCCGGu- -3'
miRNA:   3'- -GCUa---CGGCGCCaUCAGgCgCGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 30504 0.69 0.360426
Target:  5'- uCGAUGCCGaGGUGGa-UGuCGCUGAGGc -3'
miRNA:   3'- -GCUACGGCgCCAUCagGC-GCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 18159 0.69 0.368658
Target:  5'- aGGUgGCCGUGGUG--CC-CGCCGGGGc -3'
miRNA:   3'- gCUA-CGGCGCCAUcaGGcGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 44855 0.69 0.377018
Target:  5'- ---cGCCGUGGUGGcCCG-GCCugGAGGc -3'
miRNA:   3'- gcuaCGGCGCCAUCaGGCgCGG--CUCC- -5'
18775 3' -59.7 NC_004683.1 + 13953 0.69 0.377018
Target:  5'- aGGUGCCGCGugauGUCaGCGCCGGcgcGGu -3'
miRNA:   3'- gCUACGGCGCcau-CAGgCGCGGCU---CC- -5'
18775 3' -59.7 NC_004683.1 + 241 0.69 0.385505
Target:  5'- gCGAUGCCGCcgcugcuGcCCGCGgCGGGGc -3'
miRNA:   3'- -GCUACGGCGccau---CaGGCGCgGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 48220 0.68 0.394117
Target:  5'- uGAUGCaCGCGGcGGgaacaaaUCGCGCCGAa- -3'
miRNA:   3'- gCUACG-GCGCCaUCa------GGCGCGGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.