miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18775 3' -59.7 NC_004683.1 + 241 0.69 0.385505
Target:  5'- gCGAUGCCGCcgcugcuGcCCGCGgCGGGGc -3'
miRNA:   3'- -GCUACGGCGccau---CaGGCGCgGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 246 0.66 0.526458
Target:  5'- gCGGcUGCUGgGGUG--UCGaCGCCGAGGc -3'
miRNA:   3'- -GCU-ACGGCgCCAUcaGGC-GCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 3132 0.66 0.546825
Target:  5'- cCGAUGCCGauGUGGUCgGC-UCGAa- -3'
miRNA:   3'- -GCUACGGCgcCAUCAGgCGcGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 3438 0.72 0.234512
Target:  5'- aCGcgGCCGacauccaGaaGGUCCGCGCCGAGa -3'
miRNA:   3'- -GCuaCGGCg------CcaUCAGGCGCGGCUCc -5'
18775 3' -59.7 NC_004683.1 + 4918 0.7 0.321216
Target:  5'- aCGAgGCUGuCGaac-UCCGCGCCGAGGg -3'
miRNA:   3'- -GCUaCGGC-GCcaucAGGCGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 7054 0.66 0.516382
Target:  5'- uCGAgaCCGCGGU-GUCCGUcgacGCCGAa- -3'
miRNA:   3'- -GCUacGGCGCCAuCAGGCG----CGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 8182 0.66 0.506383
Target:  5'- uCGGUGCCaGCcucggGGUcGUCgGCGCCGucGa -3'
miRNA:   3'- -GCUACGG-CG-----CCAuCAGgCGCGGCucC- -5'
18775 3' -59.7 NC_004683.1 + 8562 0.66 0.546825
Target:  5'- ---aGCCGCGGgAGU-CGUGCCGGu- -3'
miRNA:   3'- gcuaCGGCGCCaUCAgGCGCGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 10495 0.86 0.023284
Target:  5'- gCGAUGCUGCGGgccGGcUUCGCGCCGAGGa -3'
miRNA:   3'- -GCUACGGCGCCa--UC-AGGCGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 12768 0.66 0.520403
Target:  5'- gGAUGCCGUgcccgccucggaucgGGuUAG-CCGCGCUGAu- -3'
miRNA:   3'- gCUACGGCG---------------CC-AUCaGGCGCGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 13953 0.69 0.377018
Target:  5'- aGGUGCCGCGugauGUCaGCGCCGGcgcGGu -3'
miRNA:   3'- gCUACGGCGCcau-CAGgCGCGGCU---CC- -5'
18775 3' -59.7 NC_004683.1 + 15109 1.09 0.00047
Target:  5'- cCGAUGCCGCGGUAGUCCGCGCCGAGGc -3'
miRNA:   3'- -GCUACGGCGCCAUCAGGCGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 15161 0.68 0.41171
Target:  5'- cCGAUGCUGgGGUGGcCUGgG-UGAGGa -3'
miRNA:   3'- -GCUACGGCgCCAUCaGGCgCgGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 15610 0.68 0.429782
Target:  5'- aGAUcgugGCCGCGGgcacgCCGCuGCgGAGGu -3'
miRNA:   3'- gCUA----CGGCGCCauca-GGCG-CGgCUCC- -5'
18775 3' -59.7 NC_004683.1 + 18001 0.66 0.536608
Target:  5'- uGGUGCCGUccuggccgGGUGGgccaCUGCGCUGuguGGc -3'
miRNA:   3'- gCUACGGCG--------CCAUCa---GGCGCGGCu--CC- -5'
18775 3' -59.7 NC_004683.1 + 18159 0.69 0.368658
Target:  5'- aGGUgGCCGUGGUG--CC-CGCCGGGGc -3'
miRNA:   3'- gCUA-CGGCGCCAUcaGGcGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 20494 0.66 0.506383
Target:  5'- cCGGUGCCGCcGUuggCCGCcCCGGGu -3'
miRNA:   3'- -GCUACGGCGcCAucaGGCGcGGCUCc -5'
18775 3' -59.7 NC_004683.1 + 20608 0.68 0.402853
Target:  5'- cCGGUGCCGcCGGUGa-UCGUGCCGGa- -3'
miRNA:   3'- -GCUACGGC-GCCAUcaGGCGCGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 21244 0.77 0.107213
Target:  5'- uCGGUGCCGacaccGUGGUCCGCGgCCGGGa -3'
miRNA:   3'- -GCUACGGCgc---CAUCAGGCGC-GGCUCc -5'
18775 3' -59.7 NC_004683.1 + 21409 0.66 0.516382
Target:  5'- ----aCCGCGGUGcuaUCCGCGCCcaguccGAGGu -3'
miRNA:   3'- gcuacGGCGCCAUc--AGGCGCGG------CUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.