Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18778 | 5' | -56.6 | NC_004683.1 | + | 26089 | 0.68 | 0.542226 |
Target: 5'- cGUCGAGcGcaggaacgcGGCCAgCGAGAUcgCCGCGGu -3' miRNA: 3'- -CGGCUCaC---------UCGGUgGCUCUA--GGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 48715 | 0.68 | 0.563217 |
Target: 5'- gGCCGccGUGcauuGGUCGCgGAG-UCCGCGGg -3' miRNA: 3'- -CGGCu-CAC----UCGGUGgCUCuAGGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 24656 | 0.68 | 0.584419 |
Target: 5'- gGCCGAG-GuAGCCGCCGAuGGgguagCCGacCGGc -3' miRNA: 3'- -CGGCUCaC-UCGGUGGCU-CUa----GGU--GCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 48043 | 0.68 | 0.59508 |
Target: 5'- cGCuCGaAGUaGuGCC-CCGGGGUgCCGCGGa -3' miRNA: 3'- -CG-GC-UCA-CuCGGuGGCUCUA-GGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 21246 | 0.67 | 0.605772 |
Target: 5'- cGUCG-GUGccgaCACCGuGGUCCGCGGc -3' miRNA: 3'- -CGGCuCACucg-GUGGCuCUAGGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 53234 | 0.67 | 0.62721 |
Target: 5'- uGCCGGGUGAGCgGugUCGGGGg-CGCGa -3' miRNA: 3'- -CGGCUCACUCGgU--GGCUCUagGUGCc -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 2465 | 0.67 | 0.648665 |
Target: 5'- gGCCGgccAGUGu-CUGCUG-GAUCCGCGGg -3' miRNA: 3'- -CGGC---UCACucGGUGGCuCUAGGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 48525 | 0.66 | 0.659376 |
Target: 5'- cCCGAuaGUGAGUCguguggacaGCCGA--UCCACGGc -3' miRNA: 3'- cGGCU--CACUCGG---------UGGCUcuAGGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 25739 | 0.66 | 0.691324 |
Target: 5'- uGCgGGGUuugggcagGAccGCCACCGcGAUCgGCGGc -3' miRNA: 3'- -CGgCUCA--------CU--CGGUGGCuCUAGgUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 8646 | 0.69 | 0.531827 |
Target: 5'- aCCGAGUGcGUCGCgGAacgCCACGGc -3' miRNA: 3'- cGGCUCACuCGGUGgCUcuaGGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 55660 | 0.69 | 0.491018 |
Target: 5'- gGCCGAcGUaGAGCgUGCCGGGGUUCAUGu -3' miRNA: 3'- -CGGCU-CA-CUCG-GUGGCUCUAGGUGCc -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 2845 | 0.75 | 0.221595 |
Target: 5'- aCCGAGuUGGccGCCGCCGAGcucgCCGCGGc -3' miRNA: 3'- cGGCUC-ACU--CGGUGGCUCua--GGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 23130 | 0.73 | 0.299174 |
Target: 5'- cGCCGAGcaGGCgaCACCGAGAccgacCCACGGg -3' miRNA: 3'- -CGGCUCacUCG--GUGGCUCUa----GGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 20706 | 0.72 | 0.329338 |
Target: 5'- uGCCGGGUGGGCCA--GGGG-CCACGu -3' miRNA: 3'- -CGGCUCACUCGGUggCUCUaGGUGCc -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 23805 | 0.72 | 0.337221 |
Target: 5'- cGCCGGGgugGuGCCGCCGccGGugccgCCGCGGc -3' miRNA: 3'- -CGGCUCa--CuCGGUGGC--UCua---GGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 40604 | 0.71 | 0.387362 |
Target: 5'- aUCGAGUGGcCCGCCGAGGggggcgCCguGCGGg -3' miRNA: 3'- cGGCUCACUcGGUGGCUCUa-----GG--UGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 41099 | 0.71 | 0.423406 |
Target: 5'- cGCCGAGgucacuGCC-CUGGGGUCCGCa- -3' miRNA: 3'- -CGGCUCacu---CGGuGGCUCUAGGUGcc -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 1650 | 0.7 | 0.461387 |
Target: 5'- cGCCGc--GGGCCGCCGGGAcgauUCCAacgUGGa -3' miRNA: 3'- -CGGCucaCUCGGUGGCUCU----AGGU---GCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 43598 | 0.7 | 0.471161 |
Target: 5'- aGCUGucGGUGAcgacGUCGCCGAcGGUCUGCGGu -3' miRNA: 3'- -CGGC--UCACU----CGGUGGCU-CUAGGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 17989 | 0.7 | 0.4751 |
Target: 5'- gGCCGGGUGGGCCACUgcgcuguguggcguuGAGcugaacgcgCUGCGGc -3' miRNA: 3'- -CGGCUCACUCGGUGG---------------CUCua-------GGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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