miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18778 5' -56.6 NC_004683.1 + 10206 0.74 0.264536
Target:  5'- gGCCGAGgaacaGGCCGCCGAaGAagaguUCCACGa -3'
miRNA:   3'- -CGGCUCac---UCGGUGGCU-CU-----AGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 45066 0.68 0.59508
Target:  5'- cGCUgGAGUGGGCCaaucaGCCGAccGA-CCACGa -3'
miRNA:   3'- -CGG-CUCACUCGG-----UGGCU--CUaGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 24964 0.67 0.62721
Target:  5'- cGCCGA---GGCCACCGAcacGAUCCGg-- -3'
miRNA:   3'- -CGGCUcacUCGGUGGCU---CUAGGUgcc -5'
18778 5' -56.6 NC_004683.1 + 40934 0.67 0.63794
Target:  5'- cGCCGAGcUGAccgcGCCGCCGuuGcCCGuCGGc -3'
miRNA:   3'- -CGGCUC-ACU----CGGUGGCucUaGGU-GCC- -5'
18778 5' -56.6 NC_004683.1 + 13836 0.66 0.655094
Target:  5'- cUCGAGUaccacaaccaucaGGCCACCGAGGaCCGCGc -3'
miRNA:   3'- cGGCUCAc------------UCGGUGGCUCUaGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 7283 0.66 0.670063
Target:  5'- -aCGAacGUG-GCCACCGAGGUCU--GGa -3'
miRNA:   3'- cgGCU--CACuCGGUGGCUCUAGGugCC- -5'
18778 5' -56.6 NC_004683.1 + 25842 0.66 0.670063
Target:  5'- uGCCu-GUGcGCCACCuGGGUUCGCGa -3'
miRNA:   3'- -CGGcuCACuCGGUGGcUCUAGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 45771 0.66 0.701879
Target:  5'- uUCGAGUacggGuGCgAUCGAGAUCCcCGGc -3'
miRNA:   3'- cGGCUCA----CuCGgUGGCUCUAGGuGCC- -5'
18778 5' -56.6 NC_004683.1 + 30508 0.66 0.712369
Target:  5'- uGCCGAGgugGAuGUCGCUGAGG-CUgaugGCGGc -3'
miRNA:   3'- -CGGCUCa--CU-CGGUGGCUCUaGG----UGCC- -5'
18778 5' -56.6 NC_004683.1 + 30025 0.68 0.573795
Target:  5'- cGCCGAGcccgagagguaUGGGCCAUgGGGGUUUugGc -3'
miRNA:   3'- -CGGCUC-----------ACUCGGUGgCUCUAGGugCc -5'
18778 5' -56.6 NC_004683.1 + 48978 0.68 0.563217
Target:  5'- cGCCGgaaAGUaccgcGGGcCCGCCGcGAUCCACGc -3'
miRNA:   3'- -CGGC---UCA-----CUC-GGUGGCuCUAGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 44736 0.72 0.342016
Target:  5'- cGCCGAGgccGAcaagcucGUCGCCGAGAUCCaaaccuacgacccgGCGGc -3'
miRNA:   3'- -CGGCUCa--CU-------CGGUGGCUCUAGG--------------UGCC- -5'
18778 5' -56.6 NC_004683.1 + 42873 0.72 0.353396
Target:  5'- uGCCGAGUucGAGauccucgaCC-CCGAGGUgCACGGg -3'
miRNA:   3'- -CGGCUCA--CUC--------GGuGGCUCUAgGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 24439 0.7 0.432727
Target:  5'- aGCCGcc--GGCCACCGAGcgCCGCa- -3'
miRNA:   3'- -CGGCucacUCGGUGGCUCuaGGUGcc -5'
18778 5' -56.6 NC_004683.1 + 49063 0.69 0.491018
Target:  5'- cCCGAaUGGGUCACCGcg--CCGCGGg -3'
miRNA:   3'- cGGCUcACUCGGUGGCucuaGGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 51296 0.69 0.517392
Target:  5'- cGCCGAGcuggaGGGCCGCCGAuGAaccucaacgccagCCGCGa -3'
miRNA:   3'- -CGGCUCa----CUCGGUGGCU-CUa------------GGUGCc -5'
18778 5' -56.6 NC_004683.1 + 41885 0.69 0.521501
Target:  5'- gGCCGAG-GGGCgC-CCGAGcGUCUACGc -3'
miRNA:   3'- -CGGCUCaCUCG-GuGGCUC-UAGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 26439 0.69 0.521501
Target:  5'- cGCCGAGUuGGCCgcagugcacACCGcGAUCCA-GGc -3'
miRNA:   3'- -CGGCUCAcUCGG---------UGGCuCUAGGUgCC- -5'
18778 5' -56.6 NC_004683.1 + 1362 0.68 0.563217
Target:  5'- cGCCGAGUucGGCCG-CGAGcgCCuCGGc -3'
miRNA:   3'- -CGGCUCAc-UCGGUgGCUCuaGGuGCC- -5'
18778 5' -56.6 NC_004683.1 + 51608 0.66 0.701879
Target:  5'- uGCCGugcGUGAuggaucagGUCGCCGAugccGAUCgCGCGGu -3'
miRNA:   3'- -CGGCu--CACU--------CGGUGGCU----CUAG-GUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.