Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18778 | 5' | -56.6 | NC_004683.1 | + | 16826 | 1.12 | 0.000581 |
Target: 5'- cGCCGAGUGAGCCACCGAGAUCCACGGu -3' miRNA: 3'- -CGGCUCACUCGGUGGCUCUAGGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 2845 | 0.75 | 0.221595 |
Target: 5'- aCCGAGuUGGccGCCGCCGAGcucgCCGCGGc -3' miRNA: 3'- cGGCUC-ACU--CGGUGGCUCua--GGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 10206 | 0.74 | 0.264536 |
Target: 5'- gGCCGAGgaacaGGCCGCCGAaGAagaguUCCACGa -3' miRNA: 3'- -CGGCUCac---UCGGUGGCU-CU-----AGGUGCc -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 23130 | 0.73 | 0.299174 |
Target: 5'- cGCCGAGcaGGCgaCACCGAGAccgacCCACGGg -3' miRNA: 3'- -CGGCUCacUCG--GUGGCUCUa----GGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 20706 | 0.72 | 0.329338 |
Target: 5'- uGCCGGGUGGGCCA--GGGG-CCACGu -3' miRNA: 3'- -CGGCUCACUCGGUggCUCUaGGUGCc -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 23805 | 0.72 | 0.337221 |
Target: 5'- cGCCGGGgugGuGCCGCCGccGGugccgCCGCGGc -3' miRNA: 3'- -CGGCUCa--CuCGGUGGC--UCua---GGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 44736 | 0.72 | 0.342016 |
Target: 5'- cGCCGAGgccGAcaagcucGUCGCCGAGAUCCaaaccuacgacccgGCGGc -3' miRNA: 3'- -CGGCUCa--CU-------CGGUGGCUCUAGG--------------UGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 42873 | 0.72 | 0.353396 |
Target: 5'- uGCCGAGUucGAGauccucgaCC-CCGAGGUgCACGGg -3' miRNA: 3'- -CGGCUCA--CUC--------GGuGGCUCUAgGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 40604 | 0.71 | 0.387362 |
Target: 5'- aUCGAGUGGcCCGCCGAGGggggcgCCguGCGGg -3' miRNA: 3'- cGGCUCACUcGGUGGCUCUa-----GG--UGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 41099 | 0.71 | 0.423406 |
Target: 5'- cGCCGAGgucacuGCC-CUGGGGUCCGCa- -3' miRNA: 3'- -CGGCUCacu---CGGuGGCUCUAGGUGcc -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 24439 | 0.7 | 0.432727 |
Target: 5'- aGCCGcc--GGCCACCGAGcgCCGCa- -3' miRNA: 3'- -CGGCucacUCGGUGGCUCuaGGUGcc -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 1650 | 0.7 | 0.461387 |
Target: 5'- cGCCGc--GGGCCGCCGGGAcgauUCCAacgUGGa -3' miRNA: 3'- -CGGCucaCUCGGUGGCUCU----AGGU---GCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 43598 | 0.7 | 0.471161 |
Target: 5'- aGCUGucGGUGAcgacGUCGCCGAcGGUCUGCGGu -3' miRNA: 3'- -CGGC--UCACU----CGGUGGCU-CUAGGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 17989 | 0.7 | 0.4751 |
Target: 5'- gGCCGGGUGGGCCACUgcgcuguguggcguuGAGcugaacgcgCUGCGGc -3' miRNA: 3'- -CGGCUCACUCGGUGG---------------CUCua-------GGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 49063 | 0.69 | 0.491018 |
Target: 5'- cCCGAaUGGGUCACCGcg--CCGCGGg -3' miRNA: 3'- cGGCUcACUCGGUGGCucuaGGUGCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 55660 | 0.69 | 0.491018 |
Target: 5'- gGCCGAcGUaGAGCgUGCCGGGGUUCAUGu -3' miRNA: 3'- -CGGCU-CA-CUCG-GUGGCUCUAGGUGCc -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 51296 | 0.69 | 0.517392 |
Target: 5'- cGCCGAGcuggaGGGCCGCCGAuGAaccucaacgccagCCGCGa -3' miRNA: 3'- -CGGCUCa----CUCGGUGGCU-CUa------------GGUGCc -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 26439 | 0.69 | 0.521501 |
Target: 5'- cGCCGAGUuGGCCgcagugcacACCGcGAUCCA-GGc -3' miRNA: 3'- -CGGCUCAcUCGG---------UGGCuCUAGGUgCC- -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 41885 | 0.69 | 0.521501 |
Target: 5'- gGCCGAG-GGGCgC-CCGAGcGUCUACGc -3' miRNA: 3'- -CGGCUCaCUCG-GuGGCUC-UAGGUGCc -5' |
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18778 | 5' | -56.6 | NC_004683.1 | + | 8646 | 0.69 | 0.531827 |
Target: 5'- aCCGAGUGcGUCGCgGAacgCCACGGc -3' miRNA: 3'- cGGCUCACuCGGUGgCUcuaGGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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