miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18778 5' -56.6 NC_004683.1 + 679 0.69 0.531827
Target:  5'- gGCCGAGUuc-CUGCuCGGGAUCCgGCGGg -3'
miRNA:   3'- -CGGCUCAcucGGUG-GCUCUAGG-UGCC- -5'
18778 5' -56.6 NC_004683.1 + 1362 0.68 0.563217
Target:  5'- cGCCGAGUucGGCCG-CGAGcgCCuCGGc -3'
miRNA:   3'- -CGGCUCAc-UCGGUgGCUCuaGGuGCC- -5'
18778 5' -56.6 NC_004683.1 + 1446 0.66 0.701879
Target:  5'- aGCCGAGgcgcucGCgGCCGAacUCgGCGGg -3'
miRNA:   3'- -CGGCUCacu---CGgUGGCUcuAGgUGCC- -5'
18778 5' -56.6 NC_004683.1 + 1650 0.7 0.461387
Target:  5'- cGCCGc--GGGCCGCCGGGAcgauUCCAacgUGGa -3'
miRNA:   3'- -CGGCucaCUCGGUGGCUCU----AGGU---GCC- -5'
18778 5' -56.6 NC_004683.1 + 2465 0.67 0.648665
Target:  5'- gGCCGgccAGUGu-CUGCUG-GAUCCGCGGg -3'
miRNA:   3'- -CGGC---UCACucGGUGGCuCUAGGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 2845 0.75 0.221595
Target:  5'- aCCGAGuUGGccGCCGCCGAGcucgCCGCGGc -3'
miRNA:   3'- cGGCUC-ACU--CGGUGGCUCua--GGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 7283 0.66 0.670063
Target:  5'- -aCGAacGUG-GCCACCGAGGUCU--GGa -3'
miRNA:   3'- cgGCU--CACuCGGUGGCUCUAGGugCC- -5'
18778 5' -56.6 NC_004683.1 + 8646 0.69 0.531827
Target:  5'- aCCGAGUGcGUCGCgGAacgCCACGGc -3'
miRNA:   3'- cGGCUCACuCGGUGgCUcuaGGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 10206 0.74 0.264536
Target:  5'- gGCCGAGgaacaGGCCGCCGAaGAagaguUCCACGa -3'
miRNA:   3'- -CGGCUCac---UCGGUGGCU-CU-----AGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 13836 0.66 0.655094
Target:  5'- cUCGAGUaccacaaccaucaGGCCACCGAGGaCCGCGc -3'
miRNA:   3'- cGGCUCAc------------UCGGUGGCUCUaGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 16826 1.12 0.000581
Target:  5'- cGCCGAGUGAGCCACCGAGAUCCACGGu -3'
miRNA:   3'- -CGGCUCACUCGGUGGCUCUAGGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 17989 0.7 0.4751
Target:  5'- gGCCGGGUGGGCCACUgcgcuguguggcguuGAGcugaacgcgCUGCGGc -3'
miRNA:   3'- -CGGCUCACUCGGUGG---------------CUCua-------GGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 20706 0.72 0.329338
Target:  5'- uGCCGGGUGGGCCA--GGGG-CCACGu -3'
miRNA:   3'- -CGGCUCACUCGGUggCUCUaGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 21246 0.67 0.605772
Target:  5'- cGUCG-GUGccgaCACCGuGGUCCGCGGc -3'
miRNA:   3'- -CGGCuCACucg-GUGGCuCUAGGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 23130 0.73 0.299174
Target:  5'- cGCCGAGcaGGCgaCACCGAGAccgacCCACGGg -3'
miRNA:   3'- -CGGCUCacUCG--GUGGCUCUa----GGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 23805 0.72 0.337221
Target:  5'- cGCCGGGgugGuGCCGCCGccGGugccgCCGCGGc -3'
miRNA:   3'- -CGGCUCa--CuCGGUGGC--UCua---GGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 24439 0.7 0.432727
Target:  5'- aGCCGcc--GGCCACCGAGcgCCGCa- -3'
miRNA:   3'- -CGGCucacUCGGUGGCUCuaGGUGcc -5'
18778 5' -56.6 NC_004683.1 + 24656 0.68 0.584419
Target:  5'- gGCCGAG-GuAGCCGCCGAuGGgguagCCGacCGGc -3'
miRNA:   3'- -CGGCUCaC-UCGGUGGCU-CUa----GGU--GCC- -5'
18778 5' -56.6 NC_004683.1 + 24964 0.67 0.62721
Target:  5'- cGCCGA---GGCCACCGAcacGAUCCGg-- -3'
miRNA:   3'- -CGGCUcacUCGGUGGCU---CUAGGUgcc -5'
18778 5' -56.6 NC_004683.1 + 25176 0.66 0.700826
Target:  5'- cGCCGGGuUGGccagaccGCCACUGAGGa--ACGGg -3'
miRNA:   3'- -CGGCUC-ACU-------CGGUGGCUCUaggUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.