miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18779 3' -58.9 NC_004683.1 + 52255 0.67 0.493222
Target:  5'- gCGCGGCACCaaGGCGcaCGAGcUCgaCGCCu -3'
miRNA:   3'- -GUGCUGUGG--UCGCc-GCUC-AGgaGCGG- -5'
18779 3' -58.9 NC_004683.1 + 44287 0.67 0.483305
Target:  5'- cCGCucCAuCCAGCGcuGCGGGUCCuugaugUCGCCc -3'
miRNA:   3'- -GUGcuGU-GGUCGC--CGCUCAGG------AGCGG- -5'
18779 3' -58.9 NC_004683.1 + 44538 0.67 0.483305
Target:  5'- aACGACGCCGauUGGUucaAGuUCCUCGCCg -3'
miRNA:   3'- gUGCUGUGGUc-GCCGc--UC-AGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 24633 0.67 0.473485
Target:  5'- gACGuCACCGGCGcccaggccGcCGAGUUCgcgCGCCu -3'
miRNA:   3'- gUGCuGUGGUCGC--------C-GCUCAGGa--GCGG- -5'
18779 3' -58.9 NC_004683.1 + 25987 0.67 0.473485
Target:  5'- gACGAuUACC-GCGGCGA--UCUCGCUg -3'
miRNA:   3'- gUGCU-GUGGuCGCCGCUcaGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 5935 0.67 0.473485
Target:  5'- cCACGAuCGgCAaCGGCGAGcCCUC-CCa -3'
miRNA:   3'- -GUGCU-GUgGUcGCCGCUCaGGAGcGG- -5'
18779 3' -58.9 NC_004683.1 + 51629 0.67 0.463766
Target:  5'- uGCGuGCGCUGGCGGCGcG-CCU-GCCg -3'
miRNA:   3'- gUGC-UGUGGUCGCCGCuCaGGAgCGG- -5'
18779 3' -58.9 NC_004683.1 + 41030 0.67 0.463766
Target:  5'- gGCGugGCCgacgggcaacGGCGGCGcGGUCagcucggCGCCc -3'
miRNA:   3'- gUGCugUGG----------UCGCCGC-UCAGga-----GCGG- -5'
18779 3' -58.9 NC_004683.1 + 6405 0.67 0.463766
Target:  5'- aGCGACACC-GCGGUcaaGGGUCg-CGCg -3'
miRNA:   3'- gUGCUGUGGuCGCCG---CUCAGgaGCGg -5'
18779 3' -58.9 NC_004683.1 + 45541 0.67 0.463766
Target:  5'- gCGCGagaaguGCugCGGCGGUGcGGaCCUCGCg -3'
miRNA:   3'- -GUGC------UGugGUCGCCGC-UCaGGAGCGg -5'
18779 3' -58.9 NC_004683.1 + 18209 0.67 0.463766
Target:  5'- nCACGGCgugcgguagguGCCGGCGGCGA--CCgcgaucgUGCCg -3'
miRNA:   3'- -GUGCUG-----------UGGUCGCCGCUcaGGa------GCGG- -5'
18779 3' -58.9 NC_004683.1 + 15201 0.67 0.460871
Target:  5'- uGCGACACCGuagaguugucgcccGCGGCGA--UCUUGCg -3'
miRNA:   3'- gUGCUGUGGU--------------CGCCGCUcaGGAGCGg -5'
18779 3' -58.9 NC_004683.1 + 14502 0.68 0.453198
Target:  5'- cUACGACACCgaGGCugacggcgaccugGGCGAGaaCUgGCCg -3'
miRNA:   3'- -GUGCUGUGG--UCG-------------CCGCUCagGAgCGG- -5'
18779 3' -58.9 NC_004683.1 + 19746 0.68 0.444649
Target:  5'- gGCGAgCGCUucGGCGGCGucguugaacccGUCCUCGgCg -3'
miRNA:   3'- gUGCU-GUGG--UCGCCGCu----------CAGGAGCgG- -5'
18779 3' -58.9 NC_004683.1 + 13792 0.68 0.444649
Target:  5'- cCGCG-CACCGGCGaaaccggauGCGA--CCUUGCCg -3'
miRNA:   3'- -GUGCuGUGGUCGC---------CGCUcaGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 41453 0.68 0.444649
Target:  5'- aCGCG-CACCgaGGcCGGgGAGaUCgUCGCCa -3'
miRNA:   3'- -GUGCuGUGG--UC-GCCgCUC-AGgAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 41780 0.68 0.444649
Target:  5'- -cCGACGCCgAGaaGUGGGUucgauaCCUCGCCg -3'
miRNA:   3'- guGCUGUGG-UCgcCGCUCA------GGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 24478 0.68 0.435257
Target:  5'- gACGAuCGCC-GCGGUG-G-CCUCGUCg -3'
miRNA:   3'- gUGCU-GUGGuCGCCGCuCaGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 46024 0.68 0.435257
Target:  5'- -cCGACG-CGGCGGCcgagcGGUCCcgCGCCa -3'
miRNA:   3'- guGCUGUgGUCGCCGc----UCAGGa-GCGG- -5'
18779 3' -58.9 NC_004683.1 + 15109 0.68 0.425981
Target:  5'- -cCGAUGCC-GCGGU-AGUCCgCGCCg -3'
miRNA:   3'- guGCUGUGGuCGCCGcUCAGGaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.