miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18779 5' -53.8 NC_004683.1 + 261 0.69 0.690313
Target:  5'- cGCGGCGGggcUGGUCGCG-ACGGUggucaaGGa -3'
miRNA:   3'- -CGCUGCU---GCUAGCGCaUGCCAag----CCa -5'
18779 5' -53.8 NC_004683.1 + 310 0.67 0.80254
Target:  5'- aGCGGCGGC-AUCGCGgcgcuCGGagUGGg -3'
miRNA:   3'- -CGCUGCUGcUAGCGCau---GCCaaGCCa -5'
18779 5' -53.8 NC_004683.1 + 442 0.66 0.821103
Target:  5'- gGCG-CGGCGGUCGag-GCGGaucCGGUg -3'
miRNA:   3'- -CGCuGCUGCUAGCgcaUGCCaa-GCCA- -5'
18779 5' -53.8 NC_004683.1 + 1518 0.72 0.48765
Target:  5'- aGCGGCGGCGAUCGgCGUGgcCGGguaUCGcGa -3'
miRNA:   3'- -CGCUGCUGCUAGC-GCAU--GCCa--AGC-Ca -5'
18779 5' -53.8 NC_004683.1 + 2447 0.67 0.811913
Target:  5'- uGCGACGcagGCGuAUCagGCGaACGGUcCGGUg -3'
miRNA:   3'- -CGCUGC---UGC-UAG--CGCaUGCCAaGCCA- -5'
18779 5' -53.8 NC_004683.1 + 6892 0.69 0.701007
Target:  5'- cGCGACGgcGCGAUCGuCGUcACGGcuacccaCGGUu -3'
miRNA:   3'- -CGCUGC--UGCUAGC-GCA-UGCCaa-----GCCA- -5'
18779 5' -53.8 NC_004683.1 + 6971 0.67 0.80254
Target:  5'- cGUGACGACGAUCGCGccgucGCGcgccGUccagCGGc -3'
miRNA:   3'- -CGCUGCUGCUAGCGCa----UGC----CAa---GCCa -5'
18779 5' -53.8 NC_004683.1 + 8628 0.67 0.810984
Target:  5'- cGCcACGGCGAUCagGCcgGUGCGGUggccgcccugcagUCGGUu -3'
miRNA:   3'- -CGcUGCUGCUAG--CG--CAUGCCA-------------AGCCA- -5'
18779 5' -53.8 NC_004683.1 + 13326 0.67 0.811913
Target:  5'- gGCGACGcCGAU-GCGgucgACGGguacaCGGUg -3'
miRNA:   3'- -CGCUGCuGCUAgCGCa---UGCCaa---GCCA- -5'
18779 5' -53.8 NC_004683.1 + 16930 1.1 0.001567
Target:  5'- cGCGACGACGAUCGCGUACGGUUCGGUg -3'
miRNA:   3'- -CGCUGCUGCUAGCGCAUGCCAAGCCA- -5'
18779 5' -53.8 NC_004683.1 + 18253 0.67 0.792993
Target:  5'- gGCGACGAgcCGGUgacCGUGacgGCGGcUUCGGg -3'
miRNA:   3'- -CGCUGCU--GCUA---GCGCa--UGCC-AAGCCa -5'
18779 5' -53.8 NC_004683.1 + 18802 0.69 0.701007
Target:  5'- gGCGuuguugauaaauGCGACGAUCGCGcuCGGUagauccUCGGc -3'
miRNA:   3'- -CGC------------UGCUGCUAGCGCauGCCA------AGCCa -5'
18779 5' -53.8 NC_004683.1 + 20918 0.67 0.773419
Target:  5'- cGUGugGGCGAUCGaCGgagACG--UCGGa -3'
miRNA:   3'- -CGCugCUGCUAGC-GCa--UGCcaAGCCa -5'
18779 5' -53.8 NC_004683.1 + 21568 0.69 0.701007
Target:  5'- gGCGGCGGCGGUgGCGggcGCGGcaugaucaccaUCGGc -3'
miRNA:   3'- -CGCUGCUGCUAgCGCa--UGCCa----------AGCCa -5'
18779 5' -53.8 NC_004683.1 + 22434 0.75 0.365874
Target:  5'- uCGGCGACGG-CGCGUAUGGgcUGGa -3'
miRNA:   3'- cGCUGCUGCUaGCGCAUGCCaaGCCa -5'
18779 5' -53.8 NC_004683.1 + 24424 0.68 0.711635
Target:  5'- uGCGGCGACGAgUCGgCGUugcaucucGCGGgugaacUCGGc -3'
miRNA:   3'- -CGCUGCUGCU-AGC-GCA--------UGCCa-----AGCCa -5'
18779 5' -53.8 NC_004683.1 + 31322 0.68 0.763414
Target:  5'- gGUGGCGGCGAugUCGCcGUgAUGGgugaagUCGGg -3'
miRNA:   3'- -CGCUGCUGCU--AGCG-CA-UGCCa-----AGCCa -5'
18779 5' -53.8 NC_004683.1 + 39880 0.66 0.847471
Target:  5'- -aGACGGCGGaUGCGcUGCGGgUUGGc -3'
miRNA:   3'- cgCUGCUGCUaGCGC-AUGCCaAGCCa -5'
18779 5' -53.8 NC_004683.1 + 40200 0.69 0.679565
Target:  5'- uUGGCGAUGGUCGCGgcCGcGUcCGGc -3'
miRNA:   3'- cGCUGCUGCUAGCGCauGC-CAaGCCa -5'
18779 5' -53.8 NC_004683.1 + 40867 0.66 0.855832
Target:  5'- cCGuCGGCGAgCGCGU-CGGUcgcggCGGUc -3'
miRNA:   3'- cGCuGCUGCUaGCGCAuGCCAa----GCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.