Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18779 | 5' | -53.8 | NC_004683.1 | + | 22434 | 0.75 | 0.365874 |
Target: 5'- uCGGCGACGG-CGCGUAUGGgcUGGa -3' miRNA: 3'- cGCUGCUGCUaGCGCAUGCCaaGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 39880 | 0.66 | 0.847471 |
Target: 5'- -aGACGGCGGaUGCGcUGCGGgUUGGc -3' miRNA: 3'- cgCUGCUGCUaGCGC-AUGCCaAGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 442 | 0.66 | 0.821103 |
Target: 5'- gGCG-CGGCGGUCGag-GCGGaucCGGUg -3' miRNA: 3'- -CGCuGCUGCUAGCgcaUGCCaa-GCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 2447 | 0.67 | 0.811913 |
Target: 5'- uGCGACGcagGCGuAUCagGCGaACGGUcCGGUg -3' miRNA: 3'- -CGCUGC---UGC-UAG--CGCaUGCCAaGCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 42581 | 0.67 | 0.811913 |
Target: 5'- cGCGccGCGGCGGUCGgGgcCGGUcgucCGGc -3' miRNA: 3'- -CGC--UGCUGCUAGCgCauGCCAa---GCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 47583 | 0.67 | 0.783283 |
Target: 5'- uGCGACGGC---UGCGUgGCGGcgUUCGGg -3' miRNA: 3'- -CGCUGCUGcuaGCGCA-UGCC--AAGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 20918 | 0.67 | 0.773419 |
Target: 5'- cGUGugGGCGAUCGaCGgagACG--UCGGa -3' miRNA: 3'- -CGCugCUGCUAGC-GCa--UGCcaAGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 31322 | 0.68 | 0.763414 |
Target: 5'- gGUGGCGGCGAugUCGCcGUgAUGGgugaagUCGGg -3' miRNA: 3'- -CGCUGCUGCU--AGCG-CA-UGCCa-----AGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 6892 | 0.69 | 0.701007 |
Target: 5'- cGCGACGgcGCGAUCGuCGUcACGGcuacccaCGGUu -3' miRNA: 3'- -CGCUGC--UGCUAGC-GCA-UGCCaa-----GCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 1518 | 0.72 | 0.48765 |
Target: 5'- aGCGGCGGCGAUCGgCGUGgcCGGguaUCGcGa -3' miRNA: 3'- -CGCUGCUGCUAGC-GCAU--GCCa--AGC-Ca -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 47667 | 0.7 | 0.625369 |
Target: 5'- cGCGACGACGGU-GUGUGCcuGGcguaUCGGg -3' miRNA: 3'- -CGCUGCUGCUAgCGCAUG--CCa---AGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 42629 | 0.7 | 0.647098 |
Target: 5'- cGCGACGACGccCGCG-ACGaGaUCGGc -3' miRNA: 3'- -CGCUGCUGCuaGCGCaUGC-CaAGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 42314 | 0.69 | 0.668773 |
Target: 5'- cGCGGCGugGGuguucgccgugaUCGCGUG-GGUUgGGc -3' miRNA: 3'- -CGCUGCugCU------------AGCGCAUgCCAAgCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 261 | 0.69 | 0.690313 |
Target: 5'- cGCGGCGGggcUGGUCGCG-ACGGUggucaaGGa -3' miRNA: 3'- -CGCUGCU---GCUAGCGCaUGCCAag----CCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 21568 | 0.69 | 0.701007 |
Target: 5'- gGCGGCGGCGGUgGCGggcGCGGcaugaucaccaUCGGc -3' miRNA: 3'- -CGCUGCUGCUAgCGCa--UGCCa----------AGCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 40867 | 0.66 | 0.855832 |
Target: 5'- cCGuCGGCGAgCGCGU-CGGUcgcggCGGUc -3' miRNA: 3'- cGCuGCUGCUaGCGCAuGCCAa----GCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 54353 | 0.77 | 0.266745 |
Target: 5'- aGUGA-GGCGAaCGCGggGCGGUUCGGUg -3' miRNA: 3'- -CGCUgCUGCUaGCGCa-UGCCAAGCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 49073 | 0.73 | 0.438378 |
Target: 5'- gGCGGCGG-GAUCGCG-GCGGgcccgCGGUa -3' miRNA: 3'- -CGCUGCUgCUAGCGCaUGCCaa---GCCA- -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 55254 | 0.73 | 0.47758 |
Target: 5'- gGCGGCGACGGcuUUGCGUucuuCGGUggGGa -3' miRNA: 3'- -CGCUGCUGCU--AGCGCAu---GCCAagCCa -5' |
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18779 | 5' | -53.8 | NC_004683.1 | + | 45573 | 0.72 | 0.48765 |
Target: 5'- gGCGACGAgcCGGUCG-GUGCGGggCGcGUc -3' miRNA: 3'- -CGCUGCU--GCUAGCgCAUGCCaaGC-CA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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