miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18782 3' -59.5 NC_004683.1 + 52230 0.72 0.2079
Target:  5'- gGGUcCGCCUcggcGAcCCGGGCCGGCGcgGc -3'
miRNA:   3'- -CCA-GCGGGaa--CU-GGUCCGGCCGCuaC- -5'
18782 3' -59.5 NC_004683.1 + 51412 0.71 0.27413
Target:  5'- uGGUCGCCUc-GACCGuuucgcGGCUGGCGuUGa -3'
miRNA:   3'- -CCAGCGGGaaCUGGU------CCGGCCGCuAC- -5'
18782 3' -59.5 NC_004683.1 + 51260 0.66 0.503231
Target:  5'- ---gGCCCUcGGCUgggagaAGGCCGGUGAg- -3'
miRNA:   3'- ccagCGGGAaCUGG------UCCGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 46926 0.67 0.473485
Target:  5'- uGGUgugUGCCCgacgcggUGACCGuGGCCaGCgGAUGa -3'
miRNA:   3'- -CCA---GCGGGa------ACUGGU-CCGGcCG-CUAC- -5'
18782 3' -59.5 NC_004683.1 + 46721 0.69 0.348096
Target:  5'- gGGUCGUCaugGugCGGGUCGGCuGAUc -3'
miRNA:   3'- -CCAGCGGgaaCugGUCCGGCCG-CUAc -5'
18782 3' -59.5 NC_004683.1 + 44939 0.66 0.533761
Target:  5'- -cUCGgCCUccaGGCCGGGCCaccacGGCGAUu -3'
miRNA:   3'- ccAGCgGGAa--CUGGUCCGG-----CCGCUAc -5'
18782 3' -59.5 NC_004683.1 + 42601 0.67 0.463766
Target:  5'- cGGUCGUCC--GGCUgggguGGUCGGCGAc- -3'
miRNA:   3'- -CCAGCGGGaaCUGGu----CCGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 32923 0.66 0.512314
Target:  5'- -cUCGCCC-UGGCCGgauuccgcuuGGCCGagaucagcggucuGCGAUGg -3'
miRNA:   3'- ccAGCGGGaACUGGU----------CCGGC-------------CGCUAC- -5'
18782 3' -59.5 NC_004683.1 + 31533 0.66 0.523506
Target:  5'- uGUCGgCgUcGGCCAcGCCGGCGAg- -3'
miRNA:   3'- cCAGCgGgAaCUGGUcCGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 31502 0.68 0.407788
Target:  5'- -cUCGCCUggGACCAGGCguaGGcCGAc- -3'
miRNA:   3'- ccAGCGGGaaCUGGUCCGg--CC-GCUac -5'
18782 3' -59.5 NC_004683.1 + 26286 0.67 0.435257
Target:  5'- cGG-CGUUCUcGACCuGGCgGGCGAg- -3'
miRNA:   3'- -CCaGCGGGAaCUGGuCCGgCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 25638 0.68 0.407788
Target:  5'- cGUUGCCgaccgcGGCCAGGgCGGCGAc- -3'
miRNA:   3'- cCAGCGGgaa---CUGGUCCgGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 25553 0.69 0.332228
Target:  5'- uGGUCGCCgCccUGGCCGcGGUCGGCa--- -3'
miRNA:   3'- -CCAGCGG-Ga-ACUGGU-CCGGCCGcuac -5'
18782 3' -59.5 NC_004683.1 + 24235 0.75 0.13284
Target:  5'- --gCGgCCUUGugCAGGUCGGCGAUc -3'
miRNA:   3'- ccaGCgGGAACugGUCCGGCCGCUAc -5'
18782 3' -59.5 NC_004683.1 + 22498 0.67 0.444649
Target:  5'- cGUCGCC---GACCAGGCCGaGcCGGa- -3'
miRNA:   3'- cCAGCGGgaaCUGGUCCGGC-C-GCUac -5'
18782 3' -59.5 NC_004683.1 + 21958 0.69 0.364499
Target:  5'- cGGcCGCCgaguucaccGGCCAGGCgGGUGGUGc -3'
miRNA:   3'- -CCaGCGGgaa------CUGGUCCGgCCGCUAC- -5'
18782 3' -59.5 NC_004683.1 + 21816 0.68 0.390088
Target:  5'- cGGUCuGCCCgcgGGCUGGGuugaauCCGGCGGc- -3'
miRNA:   3'- -CCAG-CGGGaa-CUGGUCC------GGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 21334 0.67 0.454153
Target:  5'- aGGUCgguGCCaaa---CAGGCCGGCGGUa -3'
miRNA:   3'- -CCAG---CGGgaacugGUCCGGCCGCUAc -5'
18782 3' -59.5 NC_004683.1 + 21286 0.68 0.416824
Target:  5'- uGGUCGCCCagcAgCAGGCgGGgGAUc -3'
miRNA:   3'- -CCAGCGGGaacUgGUCCGgCCgCUAc -5'
18782 3' -59.5 NC_004683.1 + 18642 0.67 0.454153
Target:  5'- aGGUCGCCCg-GugUcGGCaGGCuGAUGg -3'
miRNA:   3'- -CCAGCGGGaaCugGuCCGgCCG-CUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.