miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18783 5' -58.2 NC_004683.1 + 267 0.67 0.547909
Target:  5'- gGGGCUGGucGCGACGGUGgucaaggagCUgaccGCGGCc -3'
miRNA:   3'- aCUCGGCC--CGCUGCUACa--------GA----UGCCGc -5'
18783 5' -58.2 NC_004683.1 + 408 0.7 0.375072
Target:  5'- aGAGCugCGGGCGGUGAUGgCgcagGCGGUGg -3'
miRNA:   3'- aCUCG--GCCCGCUGCUACaGa---UGCCGC- -5'
18783 5' -58.2 NC_004683.1 + 3964 0.67 0.49961
Target:  5'- cGAGCCgaucaugGGGUGGCGGccgugGUCgaacugcaccuuggGCGGCGa -3'
miRNA:   3'- aCUCGG-------CCCGCUGCUa----CAGa-------------UGCCGC- -5'
18783 5' -58.2 NC_004683.1 + 5236 0.68 0.476665
Target:  5'- aGuGCCuGGCGACGucGUCgcCGGCGu -3'
miRNA:   3'- aCuCGGcCCGCUGCuaCAGauGCCGC- -5'
18783 5' -58.2 NC_004683.1 + 5921 0.68 0.466852
Target:  5'- aGGcGCCuuGGCGGCGGUGcCgcGCGGCGa -3'
miRNA:   3'- aCU-CGGc-CCGCUGCUACaGa-UGCCGC- -5'
18783 5' -58.2 NC_004683.1 + 10705 0.67 0.537495
Target:  5'- cGGGCgGGcuGCGugGGucacUGUCUgguaucggcGCGGCGg -3'
miRNA:   3'- aCUCGgCC--CGCugCU----ACAGA---------UGCCGC- -5'
18783 5' -58.2 NC_004683.1 + 13012 0.71 0.3185
Target:  5'- --uGCCGGGCGcCGGUGgcccCGGCGa -3'
miRNA:   3'- acuCGGCCCGCuGCUACagauGCCGC- -5'
18783 5' -58.2 NC_004683.1 + 13849 0.7 0.341933
Target:  5'- cUGAGCCGGGUucggguucGGCGGggccUGUUgccCGGCGg -3'
miRNA:   3'- -ACUCGGCCCG--------CUGCU----ACAGau-GCCGC- -5'
18783 5' -58.2 NC_004683.1 + 15559 0.69 0.410316
Target:  5'- uUGAGCCGuacuacgucaaGGUGGCGA--UCgACGGCGg -3'
miRNA:   3'- -ACUCGGC-----------CCGCUGCUacAGaUGCCGC- -5'
18783 5' -58.2 NC_004683.1 + 16877 0.69 0.419444
Target:  5'- cGAGCCGGGCGAggacucgccgcUGGUGUCgu--GCa -3'
miRNA:   3'- aCUCGGCCCGCU-----------GCUACAGaugcCGc -5'
18783 5' -58.2 NC_004683.1 + 18286 1.09 0.000599
Target:  5'- uUGAGCCGGGCGACGAUGUCUACGGCGa -3'
miRNA:   3'- -ACUCGGCCCGCUGCUACAGAUGCCGC- -5'
18783 5' -58.2 NC_004683.1 + 20301 0.67 0.52715
Target:  5'- -cGGCCgGGGCGGCGAcg---GCGGCa -3'
miRNA:   3'- acUCGG-CCCGCUGCUacagaUGCCGc -5'
18783 5' -58.2 NC_004683.1 + 21563 0.66 0.60078
Target:  5'- --uGCUGGGCGGCGgcGguggCgggcGCGGCa -3'
miRNA:   3'- acuCGGCCCGCUGCuaCa---Ga---UGCCGc -5'
18783 5' -58.2 NC_004683.1 + 23839 0.66 0.554189
Target:  5'- cGAGCUGGGCGuaGAUGUUcucgaucgggguCGGCGc -3'
miRNA:   3'- aCUCGGCCCGCugCUACAGau----------GCCGC- -5'
18783 5' -58.2 NC_004683.1 + 24291 0.68 0.447547
Target:  5'- aUGGGCCcGGuCGACGGcuaCUACGGCa -3'
miRNA:   3'- -ACUCGGcCC-GCUGCUacaGAUGCCGc -5'
18783 5' -58.2 NC_004683.1 + 24401 0.67 0.547909
Target:  5'- cGAgGCCaccGCGGCGAUcGUCggcUACGGCGg -3'
miRNA:   3'- aCU-CGGcc-CGCUGCUA-CAG---AUGCCGC- -5'
18783 5' -58.2 NC_004683.1 + 24547 0.7 0.333986
Target:  5'- gGAuCCGGGCG-CGGUGUagauccagaucUUGCGGCGc -3'
miRNA:   3'- aCUcGGCCCGCuGCUACA-----------GAUGCCGC- -5'
18783 5' -58.2 NC_004683.1 + 25969 0.67 0.506691
Target:  5'- cGGGCUGGGUcucgguauGACGAUuaCcGCGGCGa -3'
miRNA:   3'- aCUCGGCCCG--------CUGCUAcaGaUGCCGC- -5'
18783 5' -58.2 NC_004683.1 + 26545 0.68 0.438062
Target:  5'- cGGGCucggCGGGCGgccuggaucGCGGUGUgcaCUGCGGCc -3'
miRNA:   3'- aCUCG----GCCCGC---------UGCUACA---GAUGCCGc -5'
18783 5' -58.2 NC_004683.1 + 31311 0.7 0.341132
Target:  5'- cGGGCCGuggcgguGGCGGCGAUGUCgccgugAUGGg- -3'
miRNA:   3'- aCUCGGC-------CCGCUGCUACAGa-----UGCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.