miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18785 5' -58.8 NC_004683.1 + 18742 1.09 0.00057
Target:  5'- cUGAAACGCCGCACCGAGGUCGCCGGGc -3'
miRNA:   3'- -ACUUUGCGGCGUGGCUCCAGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 26222 0.82 0.053198
Target:  5'- cGAGAcCGCCGCGCCGgcgauacccgaugacAGGaUCGCCGGGc -3'
miRNA:   3'- aCUUU-GCGGCGUGGC---------------UCC-AGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 43977 0.78 0.099517
Target:  5'- cGAccACGCCGCGCCGGGuGUCGCgguaGGGc -3'
miRNA:   3'- aCUu-UGCGGCGUGGCUC-CAGCGg---CCC- -5'
18785 5' -58.8 NC_004683.1 + 52322 0.77 0.120362
Target:  5'- uUGG--UGCCGCGCCGgcccGGGUCGCCGaGGc -3'
miRNA:   3'- -ACUuuGCGGCGUGGC----UCCAGCGGC-CC- -5'
18785 5' -58.8 NC_004683.1 + 40602 0.76 0.141391
Target:  5'- cGAGugGCC-CGCCGAGGggggCGCCgugcGGGg -3'
miRNA:   3'- aCUUugCGGcGUGGCUCCa---GCGG----CCC- -5'
18785 5' -58.8 NC_004683.1 + 10597 0.75 0.170143
Target:  5'- aGAAggcGCGCCGCGCUGAGGU-GCgGGcGg -3'
miRNA:   3'- aCUU---UGCGGCGUGGCUCCAgCGgCC-C- -5'
18785 5' -58.8 NC_004683.1 + 12798 0.75 0.174654
Target:  5'- cGAAcGCGCCccgcGCGCCGAGGaUGCCGaGGa -3'
miRNA:   3'- aCUU-UGCGG----CGUGGCUCCaGCGGC-CC- -5'
18785 5' -58.8 NC_004683.1 + 17303 0.75 0.179271
Target:  5'- --cGACGuuGUACgGGGG-CGCCGGGg -3'
miRNA:   3'- acuUUGCggCGUGgCUCCaGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 1661 0.72 0.243573
Target:  5'- gGcGACGuuGcCGCCGcGGGcCGCCGGGa -3'
miRNA:   3'- aCuUUGCggC-GUGGC-UCCaGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 23391 0.72 0.253468
Target:  5'- cGGGAUGCCGCGCUGcagcGGGaugacgaugcucgUGCCGGGg -3'
miRNA:   3'- aCUUUGCGGCGUGGC----UCCa------------GCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 39610 0.72 0.255993
Target:  5'- -uGGGCGcCCGUuCCGGGGUgggcgcCGCCGGGg -3'
miRNA:   3'- acUUUGC-GGCGuGGCUCCA------GCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 21241 0.72 0.255993
Target:  5'- ----gUGCCGaCACCGuGGUCcgcgGCCGGGa -3'
miRNA:   3'- acuuuGCGGC-GUGGCuCCAG----CGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 27076 0.72 0.255993
Target:  5'- gUGAuAUGUgGCuuGCCGAGGUgGCCGGc -3'
miRNA:   3'- -ACUuUGCGgCG--UGGCUCCAgCGGCCc -5'
18785 5' -58.8 NC_004683.1 + 31280 0.72 0.262396
Target:  5'- gUGGAAUGuuGCACCGGGGguugUGCagcugCGGGc -3'
miRNA:   3'- -ACUUUGCggCGUGGCUCCa---GCG-----GCCC- -5'
18785 5' -58.8 NC_004683.1 + 22030 0.71 0.28931
Target:  5'- gUGAAcucgGCgGCCGCACCGccaccgccGGGcggaUUGCCGGGa -3'
miRNA:   3'- -ACUU----UG-CGGCGUGGC--------UCC----AGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 2843 0.7 0.325936
Target:  5'- cGAGuugGCCGcCGCCGAGcUCGCCGcGGc -3'
miRNA:   3'- aCUUug-CGGC-GUGGCUCcAGCGGC-CC- -5'
18785 5' -58.8 NC_004683.1 + 6470 0.7 0.341521
Target:  5'- cGGuguCGCUGuCGUCGAacaGGUCGCCGGGg -3'
miRNA:   3'- aCUuu-GCGGC-GUGGCU---CCAGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 13166 0.7 0.349513
Target:  5'- ---uACGUCGCAcuacuaucgccCCGcGGUUGCCGGGc -3'
miRNA:   3'- acuuUGCGGCGU-----------GGCuCCAGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 1997 0.7 0.349513
Target:  5'- gGAGACuGCCGCACCGGcuGUCGaggugUGGGa -3'
miRNA:   3'- aCUUUG-CGGCGUGGCUc-CAGCg----GCCC- -5'
18785 5' -58.8 NC_004683.1 + 25520 0.7 0.352747
Target:  5'- uUGAagcuGACGCCGUGCCGcuguggcucggccuGGUCGCCGc- -3'
miRNA:   3'- -ACU----UUGCGGCGUGGCu-------------CCAGCGGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.