miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18785 5' -58.8 NC_004683.1 + 1443 0.7 0.357638
Target:  5'- cGAGGCGCuCGCgGCCGAacUCGgCGGGa -3'
miRNA:   3'- aCUUUGCG-GCG-UGGCUccAGCgGCCC- -5'
18785 5' -58.8 NC_004683.1 + 1661 0.72 0.243573
Target:  5'- gGcGACGuuGcCGCCGcGGGcCGCCGGGa -3'
miRNA:   3'- aCuUUGCggC-GUGGC-UCCaGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 1779 0.67 0.484426
Target:  5'- cGcAACGCCG-GCCGAcGUUGCCaGGGc -3'
miRNA:   3'- aCuUUGCGGCgUGGCUcCAGCGG-CCC- -5'
18785 5' -58.8 NC_004683.1 + 1997 0.7 0.349513
Target:  5'- gGAGACuGCCGCACCGGcuGUCGaggugUGGGa -3'
miRNA:   3'- aCUUUG-CGGCGUGGCUc-CAGCg----GCCC- -5'
18785 5' -58.8 NC_004683.1 + 2843 0.7 0.325936
Target:  5'- cGAGuugGCCGcCGCCGAGcUCGCCGcGGc -3'
miRNA:   3'- aCUUug-CGGC-GUGGCUCcAGCGGC-CC- -5'
18785 5' -58.8 NC_004683.1 + 6470 0.7 0.341521
Target:  5'- cGGuguCGCUGuCGUCGAacaGGUCGCCGGGg -3'
miRNA:   3'- aCUuu-GCGGC-GUGGCU---CCAGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 6482 0.68 0.427256
Target:  5'- cGAgGACGCCaGCGCCGA----GCCGGGu -3'
miRNA:   3'- aCU-UUGCGG-CGUGGCUccagCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 10431 0.66 0.576226
Target:  5'- cGGGAUGCCGaccagGCCGucaagaAGGUUGCCGa- -3'
miRNA:   3'- aCUUUGCGGCg----UGGC------UCCAGCGGCcc -5'
18785 5' -58.8 NC_004683.1 + 10597 0.75 0.170143
Target:  5'- aGAAggcGCGCCGCGCUGAGGU-GCgGGcGg -3'
miRNA:   3'- aCUU---UGCGGCGUGGCUCCAgCGgCC-C- -5'
18785 5' -58.8 NC_004683.1 + 12798 0.75 0.174654
Target:  5'- cGAAcGCGCCccgcGCGCCGAGGaUGCCGaGGa -3'
miRNA:   3'- aCUU-UGCGG----CGUGGCUCCaGCGGC-CC- -5'
18785 5' -58.8 NC_004683.1 + 13166 0.7 0.349513
Target:  5'- ---uACGUCGCAcuacuaucgccCCGcGGUUGCCGGGc -3'
miRNA:   3'- acuuUGCGGCGU-----------GGCuCCAGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 13334 0.66 0.565767
Target:  5'- cGGucGACGgCGaCGCCGAugcGGUCGaCGGGu -3'
miRNA:   3'- aCU--UUGCgGC-GUGGCU---CCAGCgGCCC- -5'
18785 5' -58.8 NC_004683.1 + 14913 0.68 0.445878
Target:  5'- gGAGACGUU-CACCcuGGUCGCgGGGu -3'
miRNA:   3'- aCUUUGCGGcGUGGcuCCAGCGgCCC- -5'
18785 5' -58.8 NC_004683.1 + 15215 0.69 0.417213
Target:  5'- gGGAACguucaaguucgcuGCCGCGCCcGGGUCGaCGGa -3'
miRNA:   3'- aCUUUG-------------CGGCGUGGcUCCAGCgGCCc -5'
18785 5' -58.8 NC_004683.1 + 16096 0.67 0.514353
Target:  5'- cGGAACguuGCCGCGCCcuuGucGUUGCgCGGGu -3'
miRNA:   3'- aCUUUG---CGGCGUGG---CucCAGCG-GCCC- -5'
18785 5' -58.8 NC_004683.1 + 17303 0.75 0.179271
Target:  5'- --cGACGuuGUACgGGGG-CGCCGGGg -3'
miRNA:   3'- acuUUGCggCGUGgCUCCaGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 18165 0.7 0.365062
Target:  5'- cGAAGcCGCCGUcacggucACCGGcucGUCGCCGGa -3'
miRNA:   3'- aCUUU-GCGGCG-------UGGCUc--CAGCGGCCc -5'
18785 5' -58.8 NC_004683.1 + 18742 1.09 0.00057
Target:  5'- cUGAAACGCCGCACCGAGGUCGCCGGGc -3'
miRNA:   3'- -ACUUUGCGGCGUGGCUCCAGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 21241 0.72 0.255993
Target:  5'- ----gUGCCGaCACCGuGGUCcgcgGCCGGGa -3'
miRNA:   3'- acuuuGCGGC-GUGGCuCCAG----CGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 21456 0.68 0.474635
Target:  5'- cGAcaucAGCGCCGCauGCCca-GUCGCCGGu -3'
miRNA:   3'- aCU----UUGCGGCG--UGGcucCAGCGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.