miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18787 3' -54.1 NC_004683.1 + 11945 0.66 0.80936
Target:  5'- uCAGGCCAGcg-CGccCGCGCG-GGGCu -3'
miRNA:   3'- -GUCCGGUCaaaGCa-GCGUGCgCUUGc -5'
18787 3' -54.1 NC_004683.1 + 7141 0.66 0.799802
Target:  5'- -cGGCCAGguugUGgCGUugGUGGGCGu -3'
miRNA:   3'- guCCGGUCaaa-GCaGCGugCGCUUGC- -5'
18787 3' -54.1 NC_004683.1 + 21977 0.66 0.799802
Target:  5'- cCAGGCgGGUggUGcuggCGCGCGCGGcCa -3'
miRNA:   3'- -GUCCGgUCAaaGCa---GCGUGCGCUuGc -5'
18787 3' -54.1 NC_004683.1 + 35901 0.66 0.770118
Target:  5'- gCAGGUCcccg-CGUUGgGCGUGAACGa -3'
miRNA:   3'- -GUCCGGucaaaGCAGCgUGCGCUUGC- -5'
18787 3' -54.1 NC_004683.1 + 46094 0.67 0.759923
Target:  5'- cCAGGCCGucaUCGUCGagaacguCGUGGACGc -3'
miRNA:   3'- -GUCCGGUcaaAGCAGCgu-----GCGCUUGC- -5'
18787 3' -54.1 NC_004683.1 + 16781 0.67 0.739151
Target:  5'- cCAGGaCCGucUUCGUCGgGCccgagaucuGCGAGCGg -3'
miRNA:   3'- -GUCC-GGUcaAAGCAGCgUG---------CGCUUGC- -5'
18787 3' -54.1 NC_004683.1 + 20837 0.67 0.7381
Target:  5'- cCGGGUCAGUUUCGUgaccgccaccggcCGCGucgaagcguuCGCGuGCGa -3'
miRNA:   3'- -GUCCGGUCAAAGCA-------------GCGU----------GCGCuUGC- -5'
18787 3' -54.1 NC_004683.1 + 11954 0.67 0.717945
Target:  5'- gGGGCCGGaauaucugUCGggugCGCACcaGCGGGCa -3'
miRNA:   3'- gUCCGGUCaa------AGCa---GCGUG--CGCUUGc -5'
18787 3' -54.1 NC_004683.1 + 385 0.68 0.6964
Target:  5'- gCGGGCCuGg--CGUCGCugucgaaagaGCuGCGGGCGg -3'
miRNA:   3'- -GUCCGGuCaaaGCAGCG----------UG-CGCUUGC- -5'
18787 3' -54.1 NC_004683.1 + 44381 0.68 0.6964
Target:  5'- aCAGGUCGGUgcccgggcgaUCGUCG-GCGCGGAUc -3'
miRNA:   3'- -GUCCGGUCAa---------AGCAGCgUGCGCUUGc -5'
18787 3' -54.1 NC_004683.1 + 47826 0.68 0.652648
Target:  5'- aCGGuGCguGUgaCGUCGCugGCGGAa- -3'
miRNA:   3'- -GUC-CGguCAaaGCAGCGugCGCUUgc -5'
18787 3' -54.1 NC_004683.1 + 4961 0.69 0.641636
Target:  5'- gCGGGCCAG-UUCGgcgGCGCGCuccaGGCGg -3'
miRNA:   3'- -GUCCGGUCaAAGCag-CGUGCGc---UUGC- -5'
18787 3' -54.1 NC_004683.1 + 10554 0.69 0.630615
Target:  5'- gGGGCCAGUaacgaccgcaUCGUCGCucAgGCuGAGCGg -3'
miRNA:   3'- gUCCGGUCAa---------AGCAGCG--UgCG-CUUGC- -5'
18787 3' -54.1 NC_004683.1 + 39221 0.69 0.608588
Target:  5'- --cGCCAGg--CGuUCGCACGCGAAg- -3'
miRNA:   3'- gucCGGUCaaaGC-AGCGUGCGCUUgc -5'
18787 3' -54.1 NC_004683.1 + 12957 0.7 0.564847
Target:  5'- -uGGCCGGUcUCuGUCGaccacaAUGCGGACGa -3'
miRNA:   3'- guCCGGUCAaAG-CAGCg-----UGCGCUUGC- -5'
18787 3' -54.1 NC_004683.1 + 35819 0.7 0.564847
Target:  5'- cCAGGCuCAGgcgCGUCGUGCG-GAugGa -3'
miRNA:   3'- -GUCCG-GUCaaaGCAGCGUGCgCUugC- -5'
18787 3' -54.1 NC_004683.1 + 54113 0.72 0.470279
Target:  5'- uGGGCgAG-UUCGUCG-GCGCGGAUGa -3'
miRNA:   3'- gUCCGgUCaAAGCAGCgUGCGCUUGC- -5'
18787 3' -54.1 NC_004683.1 + 41462 0.72 0.450336
Target:  5'- gAGGCCGGggagaUCGUCGC-CaCGAGCGu -3'
miRNA:   3'- gUCCGGUCaa---AGCAGCGuGcGCUUGC- -5'
18787 3' -54.1 NC_004683.1 + 55819 0.73 0.393461
Target:  5'- -cGGCCA----UGUCGUGCGCGAACGu -3'
miRNA:   3'- guCCGGUcaaaGCAGCGUGCGCUUGC- -5'
18787 3' -54.1 NC_004683.1 + 45563 0.75 0.325261
Target:  5'- -cGGUCGGUgcggggcgCGUCGCGCGCGAGa- -3'
miRNA:   3'- guCCGGUCAaa------GCAGCGUGCGCUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.