miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18787 5' -55.7 NC_004683.1 + 12267 0.76 0.232781
Target:  5'- cGCUGGUGGCGGcauaggcuacUACGAggUcGACCCa -3'
miRNA:   3'- -CGGCCACCGCCa---------GUGCUuuGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 13368 0.74 0.3043
Target:  5'- uCCGGUGGCGGcggcacgcugccauUCAUGGgccaGGgUGGCCCg -3'
miRNA:   3'- cGGCCACCGCC--------------AGUGCU----UUgACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 13412 0.66 0.715469
Target:  5'- gGCUcgaGGgGGUGGUCGCcGGugUGGCCg -3'
miRNA:   3'- -CGG---CCaCCGCCAGUGcUUugACUGGg -5'
18787 5' -55.7 NC_004683.1 + 13592 0.69 0.544156
Target:  5'- gGCCcugGGUcGCGGUCAUGAucgcguccaucGGCaGGCCCg -3'
miRNA:   3'- -CGG---CCAcCGCCAGUGCU-----------UUGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 14216 0.68 0.637359
Target:  5'- uGCUGGUGcGUGGcCGCGAcccgcagcacugccGcaaGCUGugCCg -3'
miRNA:   3'- -CGGCCAC-CGCCaGUGCU--------------U---UGACugGG- -5'
18787 5' -55.7 NC_004683.1 + 14745 0.81 0.106897
Target:  5'- uGuuGGUGGCGGUCugGAAGuccuuguagGGCCCg -3'
miRNA:   3'- -CggCCACCGCCAGugCUUUga-------CUGGG- -5'
18787 5' -55.7 NC_004683.1 + 14869 0.66 0.746578
Target:  5'- -aCGGUGauGCGuUCGCGGGugcuGCUGAUCCc -3'
miRNA:   3'- cgGCCAC--CGCcAGUGCUU----UGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 15498 0.71 0.433739
Target:  5'- gGCCGGUGGaauaagaaguCGGUCauucccGCGAAAUUG-CCUg -3'
miRNA:   3'- -CGGCCACC----------GCCAG------UGCUUUGACuGGG- -5'
18787 5' -55.7 NC_004683.1 + 18143 0.68 0.597429
Target:  5'- cGCCGG-GGCGucGUUAgGgAGGCUG-CCCa -3'
miRNA:   3'- -CGGCCaCCGC--CAGUgC-UUUGACuGGG- -5'
18787 5' -55.7 NC_004683.1 + 19237 0.7 0.482459
Target:  5'- cGCCGGgucgaacGCGGUgCGCGucGAGCUGauGCCCu -3'
miRNA:   3'- -CGGCCac-----CGCCA-GUGC--UUUGAC--UGGG- -5'
18787 5' -55.7 NC_004683.1 + 20022 0.73 0.337466
Target:  5'- gGgCGGUGGUGGUCGCGGcca-GACCg -3'
miRNA:   3'- -CgGCCACCGCCAGUGCUuugaCUGGg -5'
18787 5' -55.7 NC_004683.1 + 20158 0.71 0.42434
Target:  5'- -aCGGUGGCGuG-CACGAucg-GGCCCg -3'
miRNA:   3'- cgGCCACCGC-CaGUGCUuugaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 20496 0.66 0.704927
Target:  5'- gGCCGGUGGUGGagGCcGGGCgGGuaaCCa -3'
miRNA:   3'- -CGGCCACCGCCagUGcUUUGaCUg--GG- -5'
18787 5' -55.7 NC_004683.1 + 20685 0.68 0.586685
Target:  5'- aCUGGcaaGCGGUgACGAuGACUGACCg -3'
miRNA:   3'- cGGCCac-CGCCAgUGCU-UUGACUGGg -5'
18787 5' -55.7 NC_004683.1 + 20921 1.14 0.000493
Target:  5'- gGCCGGUGGCGGUCACGAAACUGACCCg -3'
miRNA:   3'- -CGGCCACCGCCAGUGCUUUGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 21573 0.69 0.575979
Target:  5'- cGgCGGUGGCGGgCGCGGca-UGAUCa -3'
miRNA:   3'- -CgGCCACCGCCaGUGCUuugACUGGg -5'
18787 5' -55.7 NC_004683.1 + 21694 0.66 0.736306
Target:  5'- aCCGG-GGUGGUCgguGCGGGuggcGCUGGCa- -3'
miRNA:   3'- cGGCCaCCGCCAG---UGCUU----UGACUGgg -5'
18787 5' -55.7 NC_004683.1 + 23148 0.67 0.666483
Target:  5'- cGCCGGUGaGCaccaGGcCGCcgagcaggcgacaccGAGACcGACCCa -3'
miRNA:   3'- -CGGCCAC-CG----CCaGUG---------------CUUUGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 24078 0.7 0.492521
Target:  5'- gGCCGGggcgGGCGGUgGCGu-GgUGAUCg -3'
miRNA:   3'- -CGGCCa---CCGCCAgUGCuuUgACUGGg -5'
18787 5' -55.7 NC_004683.1 + 24483 0.66 0.715469
Target:  5'- cCCGGauccGGCGcccCAUGGAACgucgGACCCa -3'
miRNA:   3'- cGGCCa---CCGCca-GUGCUUUGa---CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.