miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18787 5' -55.7 NC_004683.1 + 269 0.78 0.165462
Target:  5'- gGCUGGUcgcgacGGUGGUCAaGGAGCUGACCg -3'
miRNA:   3'- -CGGCCA------CCGCCAGUgCUUUGACUGGg -5'
18787 5' -55.7 NC_004683.1 + 438 0.69 0.575979
Target:  5'- gGCUGGcgcGGCGGUC--GAGGCgGAUCCg -3'
miRNA:   3'- -CGGCCa--CCGCCAGugCUUUGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 2275 0.66 0.736306
Target:  5'- -gCGGcacaGGCGGUCGCGGccaguAgUGcACCCg -3'
miRNA:   3'- cgGCCa---CCGCCAGUGCUu----UgAC-UGGG- -5'
18787 5' -55.7 NC_004683.1 + 2367 0.7 0.512927
Target:  5'- uUCGGUGGUGGcguccCGCGGAuccagcagacACUGGCCg -3'
miRNA:   3'- cGGCCACCGCCa----GUGCUU----------UGACUGGg -5'
18787 5' -55.7 NC_004683.1 + 3508 0.67 0.682578
Target:  5'- aUCGGUGGUGGcCGCGGugaacucGGgUGAUCUg -3'
miRNA:   3'- cGGCCACCGCCaGUGCU-------UUgACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 3890 0.68 0.586685
Target:  5'- cGCCaGG-GGCGaucuucUCGCGGAACUuGCCCu -3'
miRNA:   3'- -CGG-CCaCCGCc-----AGUGCUUUGAcUGGG- -5'
18787 5' -55.7 NC_004683.1 + 5248 0.67 0.694316
Target:  5'- cUUGGUGGCGGcggcgcgCACGuugucGCUGGCgCCc -3'
miRNA:   3'- cGGCCACCGCCa------GUGCuu---UGACUG-GG- -5'
18787 5' -55.7 NC_004683.1 + 5534 0.66 0.756738
Target:  5'- cGCCGGUGGCG---ACGAc-CUGGCg- -3'
miRNA:   3'- -CGGCCACCGCcagUGCUuuGACUGgg -5'
18787 5' -55.7 NC_004683.1 + 5777 0.68 0.6082
Target:  5'- gGCCGGUGcCGGUCGUGAGGgUcacGGCCUc -3'
miRNA:   3'- -CGGCCACcGCCAGUGCUUUgA---CUGGG- -5'
18787 5' -55.7 NC_004683.1 + 5896 0.66 0.747599
Target:  5'- uCCGGcaguucgacacccagGGCGG-CGCGGGACUgugGACCa -3'
miRNA:   3'- cGGCCa--------------CCGCCaGUGCUUUGA---CUGGg -5'
18787 5' -55.7 NC_004683.1 + 5974 0.7 0.523259
Target:  5'- gGCCGGUGG-GuGagGCGAGGCgaugGACgCCa -3'
miRNA:   3'- -CGGCCACCgC-CagUGCUUUGa---CUG-GG- -5'
18787 5' -55.7 NC_004683.1 + 6562 0.67 0.694316
Target:  5'- cGCCGGccgagaacGGCGaUgGCGGAACUGaaGCCUg -3'
miRNA:   3'- -CGGCCa-------CCGCcAgUGCUUUGAC--UGGG- -5'
18787 5' -55.7 NC_004683.1 + 7336 0.68 0.6406
Target:  5'- gGCCGucGGgGGUCuCGAucgAGCUGGCCg -3'
miRNA:   3'- -CGGCcaCCgCCAGuGCU---UUGACUGGg -5'
18787 5' -55.7 NC_004683.1 + 7674 0.68 0.618992
Target:  5'- cGCCGcGUcgugGGCGGUgAUGAAGaaGGCCa -3'
miRNA:   3'- -CGGC-CA----CCGCCAgUGCUUUgaCUGGg -5'
18787 5' -55.7 NC_004683.1 + 8024 0.66 0.709153
Target:  5'- aGCCGGUGaugcgcaccGCGGUCgagcGCGAcaucgaugccgAGCugccguucugugaggUGACCCg -3'
miRNA:   3'- -CGGCCAC---------CGCCAG----UGCU-----------UUG---------------ACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 10700 0.66 0.746578
Target:  5'- cGUCGGUGGCa-UCGCGGAcC--GCCCg -3'
miRNA:   3'- -CGGCCACCGccAGUGCUUuGacUGGG- -5'
18787 5' -55.7 NC_004683.1 + 12009 0.66 0.731131
Target:  5'- aGCCGGUaucgacGCGGgccagcgcgcccgCGCGGggcuaccgccggaGGCUGGCCCc -3'
miRNA:   3'- -CGGCCAc-----CGCCa------------GUGCU-------------UUGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 12047 0.7 0.522222
Target:  5'- cCCGGUgugggcagcGGCGGUagccccgCGCGGGcgcGCUGGCCUg -3'
miRNA:   3'- cGGCCA---------CCGCCA-------GUGCUU---UGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 12117 0.7 0.522222
Target:  5'- aGCCuccGGCGGUagccccgCGCGGGcgcGCUGGCCCg -3'
miRNA:   3'- -CGGccaCCGCCA-------GUGCUU---UGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 12231 0.67 0.672931
Target:  5'- cGCCGG-GGCGGgagCGCccGGC-GugCCg -3'
miRNA:   3'- -CGGCCaCCGCCa--GUGcuUUGaCugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.