miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18787 5' -55.7 NC_004683.1 + 46594 0.66 0.714419
Target:  5'- cGCCaGUGGCuugucccGGUCucCGAuccGCUGcCCCa -3'
miRNA:   3'- -CGGcCACCG-------CCAGu-GCUu--UGACuGGG- -5'
18787 5' -55.7 NC_004683.1 + 53112 0.66 0.736306
Target:  5'- gGCCGG-GGCGuUCGucguUGGAGgUGACCa -3'
miRNA:   3'- -CGGCCaCCGCcAGU----GCUUUgACUGGg -5'
18787 5' -55.7 NC_004683.1 + 14869 0.66 0.746578
Target:  5'- -aCGGUGauGCGuUCGCGGGugcuGCUGAUCCc -3'
miRNA:   3'- cgGCCAC--CGCcAGUGCUU----UGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 44855 0.66 0.746578
Target:  5'- cGCCguGGUGGCccGGcCugGAGGCcgaGugCCg -3'
miRNA:   3'- -CGG--CCACCG--CCaGugCUUUGa--CugGG- -5'
18787 5' -55.7 NC_004683.1 + 12009 0.66 0.731131
Target:  5'- aGCCGGUaucgacGCGGgccagcgcgcccgCGCGGggcuaccgccggaGGCUGGCCCc -3'
miRNA:   3'- -CGGCCAc-----CGCCa------------GUGCU-------------UUGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 5896 0.66 0.747599
Target:  5'- uCCGGcaguucgacacccagGGCGG-CGCGGGACUgugGACCa -3'
miRNA:   3'- cGGCCa--------------CCGCCaGUGCUUUGA---CUGGg -5'
18787 5' -55.7 NC_004683.1 + 51698 0.66 0.736306
Target:  5'- gGCuCGGgGGCGGgcuugaUCGCGucGAGCUcGGCCUg -3'
miRNA:   3'- -CG-GCCaCCGCC------AGUGC--UUUGA-CUGGG- -5'
18787 5' -55.7 NC_004683.1 + 49089 0.66 0.72489
Target:  5'- cCCGGUcgggcuugagggcGGCGGgaUCGCG--GCgGGCCCg -3'
miRNA:   3'- cGGCCA-------------CCGCC--AGUGCuuUGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 48715 0.66 0.704927
Target:  5'- gGCCGccGUGcauUGGUCGCGGAguccGCgGGCCCa -3'
miRNA:   3'- -CGGC--CACc--GCCAGUGCUU----UGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 21694 0.66 0.736306
Target:  5'- aCCGG-GGUGGUCgguGCGGGuggcGCUGGCa- -3'
miRNA:   3'- cGGCCaCCGCCAG---UGCUU----UGACUGgg -5'
18787 5' -55.7 NC_004683.1 + 39965 0.66 0.725933
Target:  5'- cGCCGGcUGGUGacucgCGuCGAggUUGACCg -3'
miRNA:   3'- -CGGCC-ACCGCca---GU-GCUuuGACUGGg -5'
18787 5' -55.7 NC_004683.1 + 24483 0.66 0.715469
Target:  5'- cCCGGauccGGCGcccCAUGGAACgucgGACCCa -3'
miRNA:   3'- cGGCCa---CCGCca-GUGCUUUGa---CUGGG- -5'
18787 5' -55.7 NC_004683.1 + 2275 0.66 0.736306
Target:  5'- -gCGGcacaGGCGGUCGCGGccaguAgUGcACCCg -3'
miRNA:   3'- cgGCCa---CCGCCAGUGCUu----UgAC-UGGG- -5'
18787 5' -55.7 NC_004683.1 + 56292 0.66 0.725933
Target:  5'- cGUCGGggauacUGGCGGcCGagguaGAAGCUGACg- -3'
miRNA:   3'- -CGGCC------ACCGCCaGUg----CUUUGACUGgg -5'
18787 5' -55.7 NC_004683.1 + 13412 0.66 0.715469
Target:  5'- gGCUcgaGGgGGUGGUCGCcGGugUGGCCg -3'
miRNA:   3'- -CGG---CCaCCGCCAGUGcUUugACUGGg -5'
18787 5' -55.7 NC_004683.1 + 5534 0.66 0.756738
Target:  5'- cGCCGGUGGCG---ACGAc-CUGGCg- -3'
miRNA:   3'- -CGGCCACCGCcagUGCUuuGACUGgg -5'
18787 5' -55.7 NC_004683.1 + 20496 0.66 0.704927
Target:  5'- gGCCGGUGGUGGagGCcGGGCgGGuaaCCa -3'
miRNA:   3'- -CGGCCACCGCCagUGcUUUGaCUg--GG- -5'
18787 5' -55.7 NC_004683.1 + 42383 0.66 0.704927
Target:  5'- gGCCGGaaucgccacGGCGG-CAgccaccuugggcUGGAGCUGGCUCa -3'
miRNA:   3'- -CGGCCa--------CCGCCaGU------------GCUUUGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 8024 0.66 0.709153
Target:  5'- aGCCGGUGaugcgcaccGCGGUCgagcGCGAcaucgaugccgAGCugccguucugugaggUGACCCg -3'
miRNA:   3'- -CGGCCAC---------CGCCAG----UGCU-----------UUG---------------ACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 31443 0.66 0.715469
Target:  5'- cGgCGGcGGCGGUCACccaAAAC-GGCCa -3'
miRNA:   3'- -CgGCCaCCGCCAGUGc--UUUGaCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.