miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18787 5' -55.7 NC_004683.1 + 32701 0.67 0.651397
Target:  5'- gGCa-GUGGCaGcUCGCGccGGCUGGCCCg -3'
miRNA:   3'- -CGgcCACCGcC-AGUGCu-UUGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 42610 0.69 0.554706
Target:  5'- gGCUGG-GGUGGUCGgCGAccgcGACgacGCCCg -3'
miRNA:   3'- -CGGCCaCCGCCAGU-GCU----UUGac-UGGG- -5'
18787 5' -55.7 NC_004683.1 + 30508 0.69 0.565317
Target:  5'- uGCCgaGGUGGauGUCGCuGAGGCUGAUg- -3'
miRNA:   3'- -CGG--CCACCgcCAGUG-CUUUGACUGgg -5'
18787 5' -55.7 NC_004683.1 + 438 0.69 0.575979
Target:  5'- gGCUGGcgcGGCGGUC--GAGGCgGAUCCg -3'
miRNA:   3'- -CGGCCa--CCGCCAGugCUUUGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 21573 0.69 0.575979
Target:  5'- cGgCGGUGGCGGgCGCGGca-UGAUCa -3'
miRNA:   3'- -CgGCCACCGCCaGUGCUuugACUGGg -5'
18787 5' -55.7 NC_004683.1 + 20685 0.68 0.586685
Target:  5'- aCUGGcaaGCGGUgACGAuGACUGACCg -3'
miRNA:   3'- cGGCCac-CGCCAgUGCU-UUGACUGGg -5'
18787 5' -55.7 NC_004683.1 + 26333 0.68 0.586685
Target:  5'- aCCGGcgcugucGGCGGU-GCGAGGCcgcguUGGCCCu -3'
miRNA:   3'- cGGCCa------CCGCCAgUGCUUUG-----ACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 7674 0.68 0.618992
Target:  5'- cGCCGcGUcgugGGCGGUgAUGAAGaaGGCCa -3'
miRNA:   3'- -CGGC-CA----CCGCCAgUGCUUUgaCUGGg -5'
18787 5' -55.7 NC_004683.1 + 14216 0.68 0.637359
Target:  5'- uGCUGGUGcGUGGcCGCGAcccgcagcacugccGcaaGCUGugCCg -3'
miRNA:   3'- -CGGCCAC-CGCCaGUGCU--------------U---UGACugGG- -5'
18787 5' -55.7 NC_004683.1 + 41400 0.69 0.544155
Target:  5'- cGUCGGcUGGCGGcgUgGCuGGugUGGCCCu -3'
miRNA:   3'- -CGGCC-ACCGCC--AgUGcUUugACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 5974 0.7 0.523259
Target:  5'- gGCCGGUGG-GuGagGCGAGGCgaugGACgCCa -3'
miRNA:   3'- -CGGCCACCgC-CagUGCUUUGa---CUG-GG- -5'
18787 5' -55.7 NC_004683.1 + 2367 0.7 0.512927
Target:  5'- uUCGGUGGUGGcguccCGCGGAuccagcagacACUGGCCg -3'
miRNA:   3'- cGGCCACCGCCa----GUGCUU----------UGACUGGg -5'
18787 5' -55.7 NC_004683.1 + 12267 0.76 0.232781
Target:  5'- cGCUGGUGGCGGcauaggcuacUACGAggUcGACCCa -3'
miRNA:   3'- -CGGCCACCGCCa---------GUGCUuuGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 13368 0.74 0.3043
Target:  5'- uCCGGUGGCGGcggcacgcugccauUCAUGGgccaGGgUGGCCCg -3'
miRNA:   3'- cGGCCACCGCC--------------AGUGCU----UUgACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 20022 0.73 0.337466
Target:  5'- gGgCGGUGGUGGUCGCGGcca-GACCg -3'
miRNA:   3'- -CgGCCACCGCCAGUGCUuugaCUGGg -5'
18787 5' -55.7 NC_004683.1 + 26148 0.73 0.353765
Target:  5'- cGCCGGcgcGGCGGUCuc---GCUGAUCCu -3'
miRNA:   3'- -CGGCCa--CCGCCAGugcuuUGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 20158 0.71 0.42434
Target:  5'- -aCGGUGGCGuG-CACGAucg-GGCCCg -3'
miRNA:   3'- cgGCCACCGC-CaGUGCUuugaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 15498 0.71 0.433739
Target:  5'- gGCCGGUGGaauaagaaguCGGUCauucccGCGAAAUUG-CCUg -3'
miRNA:   3'- -CGGCCACC----------GCCAG------UGCUUUGACuGGG- -5'
18787 5' -55.7 NC_004683.1 + 19237 0.7 0.482459
Target:  5'- cGCCGGgucgaacGCGGUgCGCGucGAGCUGauGCCCu -3'
miRNA:   3'- -CGGCCac-----CGCCA-GUGC--UUUGAC--UGGG- -5'
18787 5' -55.7 NC_004683.1 + 33607 0.7 0.502679
Target:  5'- aGCCGcUGGUaGUaccgCACGggGCUGACaCCg -3'
miRNA:   3'- -CGGCcACCGcCA----GUGCuuUGACUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.