miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18787 5' -55.7 NC_004683.1 + 20921 1.14 0.000493
Target:  5'- gGCCGGUGGCGGUCACGAAACUGACCCg -3'
miRNA:   3'- -CGGCCACCGCCAGUGCUUUGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 31482 0.83 0.080825
Target:  5'- aCUGGUGGCGGUCGCcgcaguGCUGGCCUa -3'
miRNA:   3'- cGGCCACCGCCAGUGcuu---UGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 14745 0.81 0.106897
Target:  5'- uGuuGGUGGCGGUCugGAAGuccuuguagGGCCCg -3'
miRNA:   3'- -CggCCACCGCCAGugCUUUga-------CUGGG- -5'
18787 5' -55.7 NC_004683.1 + 269 0.78 0.165462
Target:  5'- gGCUGGUcgcgacGGUGGUCAaGGAGCUGACCg -3'
miRNA:   3'- -CGGCCA------CCGCCAGUgCUUUGACUGGg -5'
18787 5' -55.7 NC_004683.1 + 12267 0.76 0.232781
Target:  5'- cGCUGGUGGCGGcauaggcuacUACGAggUcGACCCa -3'
miRNA:   3'- -CGGCCACCGCCa---------GUGCUuuGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 45476 0.74 0.284785
Target:  5'- cGCUGGuUGGCGGUCAgGGguGGCcgUGACCa -3'
miRNA:   3'- -CGGCC-ACCGCCAGUgCU--UUG--ACUGGg -5'
18787 5' -55.7 NC_004683.1 + 13368 0.74 0.3043
Target:  5'- uCCGGUGGCGGcggcacgcugccauUCAUGGgccaGGgUGGCCCg -3'
miRNA:   3'- cGGCCACCGCC--------------AGUGCU----UUgACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 20022 0.73 0.337466
Target:  5'- gGgCGGUGGUGGUCGCGGcca-GACCg -3'
miRNA:   3'- -CgGCCACCGCCAGUGCUuugaCUGGg -5'
18787 5' -55.7 NC_004683.1 + 26148 0.73 0.353765
Target:  5'- cGCCGGcgcGGCGGUCuc---GCUGAUCCu -3'
miRNA:   3'- -CGGCCa--CCGCCAGugcuuUGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 43476 0.73 0.362121
Target:  5'- aGCCGGaucgccUGGCGGUUGCGgcGCcGcCCCu -3'
miRNA:   3'- -CGGCC------ACCGCCAGUGCuuUGaCuGGG- -5'
18787 5' -55.7 NC_004683.1 + 47277 0.72 0.388
Target:  5'- gGCCGGUGG-GGUgacCGCGuuGCcGGCCUg -3'
miRNA:   3'- -CGGCCACCgCCA---GUGCuuUGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 20158 0.71 0.42434
Target:  5'- -aCGGUGGCGuG-CACGAucg-GGCCCg -3'
miRNA:   3'- cgGCCACCGC-CaGUGCUuugaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 15498 0.71 0.433739
Target:  5'- gGCCGGUGGaauaagaaguCGGUCauucccGCGAAAUUG-CCUg -3'
miRNA:   3'- -CGGCCACC----------GCCAG------UGCUUUGACuGGG- -5'
18787 5' -55.7 NC_004683.1 + 52318 0.71 0.443257
Target:  5'- uGCCGcGccGGCccgGGUCGcCGAGGCgGACCCg -3'
miRNA:   3'- -CGGC-Ca-CCG---CCAGU-GCUUUGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 32671 0.71 0.46264
Target:  5'- gGCUacGUGGUGGUgaACGAGGCUGGCaCCc -3'
miRNA:   3'- -CGGc-CACCGCCAg-UGCUUUGACUG-GG- -5'
18787 5' -55.7 NC_004683.1 + 19237 0.7 0.482459
Target:  5'- cGCCGGgucgaacGCGGUgCGCGucGAGCUGauGCCCu -3'
miRNA:   3'- -CGGCCac-----CGCCA-GUGC--UUUGAC--UGGG- -5'
18787 5' -55.7 NC_004683.1 + 24078 0.7 0.492521
Target:  5'- gGCCGGggcgGGCGGUgGCGu-GgUGAUCg -3'
miRNA:   3'- -CGGCCa---CCGCCAgUGCuuUgACUGGg -5'
18787 5' -55.7 NC_004683.1 + 33607 0.7 0.502679
Target:  5'- aGCCGcUGGUaGUaccgCACGggGCUGACaCCg -3'
miRNA:   3'- -CGGCcACCGcCA----GUGCuuUGACUG-GG- -5'
18787 5' -55.7 NC_004683.1 + 2367 0.7 0.512927
Target:  5'- uUCGGUGGUGGcguccCGCGGAuccagcagacACUGGCCg -3'
miRNA:   3'- cGGCCACCGCCa----GUGCUU----------UGACUGGg -5'
18787 5' -55.7 NC_004683.1 + 12117 0.7 0.522222
Target:  5'- aGCCuccGGCGGUagccccgCGCGGGcgcGCUGGCCCg -3'
miRNA:   3'- -CGGccaCCGCCA-------GUGCUU---UGACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.