miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18788 5' -56.7 NC_004683.1 + 21476 1.08 0.000713
Target:  5'- gAUCGGAAUCAGCAGGGCCGCGACAUCa -3'
miRNA:   3'- -UAGCCUUAGUCGUCCCGGCGCUGUAG- -5'
18788 5' -56.7 NC_004683.1 + 56861 0.75 0.177157
Target:  5'- cUCGGGAccUCGGUAGcGGCUGCGGuCGUCg -3'
miRNA:   3'- uAGCCUU--AGUCGUC-CCGGCGCU-GUAG- -5'
18788 5' -56.7 NC_004683.1 + 3503 0.73 0.243834
Target:  5'- -cCGGAAUCGGUGGuGGCCGCGGu--- -3'
miRNA:   3'- uaGCCUUAGUCGUC-CCGGCGCUguag -5'
18788 5' -56.7 NC_004683.1 + 14958 0.72 0.284392
Target:  5'- -gCGGGAUCAGCAGcacCCGCGaacGCAUCa -3'
miRNA:   3'- uaGCCUUAGUCGUCcc-GGCGC---UGUAG- -5'
18788 5' -56.7 NC_004683.1 + 18249 0.71 0.314283
Target:  5'- uGUCGGGAUCGGCAaggcGGuGCC-CGGCGUg -3'
miRNA:   3'- -UAGCCUUAGUCGU----CC-CGGcGCUGUAg -5'
18788 5' -56.7 NC_004683.1 + 23943 0.71 0.314283
Target:  5'- cUCGG--UCAGCGGGccgaagucGCCGuCGACGUCg -3'
miRNA:   3'- uAGCCuuAGUCGUCC--------CGGC-GCUGUAG- -5'
18788 5' -56.7 NC_004683.1 + 52401 0.7 0.355753
Target:  5'- -cCGGAAUCGGCcguccuugagcgccuGGGCCagcuuuucgGCGGCGUCu -3'
miRNA:   3'- uaGCCUUAGUCGu--------------CCCGG---------CGCUGUAG- -5'
18788 5' -56.7 NC_004683.1 + 14676 0.7 0.363459
Target:  5'- cGUCGGggUCaucuuuccAGC-GGGCCuGCGACccGUCg -3'
miRNA:   3'- -UAGCCuuAG--------UCGuCCCGG-CGCUG--UAG- -5'
18788 5' -56.7 NC_004683.1 + 3238 0.7 0.380995
Target:  5'- cGUCGGAcuGUCcgagGGCcuGGCCGCGGCGa- -3'
miRNA:   3'- -UAGCCU--UAG----UCGucCCGGCGCUGUag -5'
18788 5' -56.7 NC_004683.1 + 45535 0.7 0.389972
Target:  5'- -aCGGcagCAGCGGcGCCGCGACAa- -3'
miRNA:   3'- uaGCCuuaGUCGUCcCGGCGCUGUag -5'
18788 5' -56.7 NC_004683.1 + 13839 0.69 0.408336
Target:  5'- uUCGGGuUCGGCGGGGCCuguugccCGGCGg- -3'
miRNA:   3'- uAGCCUuAGUCGUCCCGGc------GCUGUag -5'
18788 5' -56.7 NC_004683.1 + 8857 0.69 0.408336
Target:  5'- cGUCGGuGUCGauGCucGGCCGCGACGa- -3'
miRNA:   3'- -UAGCCuUAGU--CGucCCGGCGCUGUag -5'
18788 5' -56.7 NC_004683.1 + 3973 0.68 0.465513
Target:  5'- gAUCGGGAUCgAGCcgaucauGGGGUgGCGGCcgugGUCg -3'
miRNA:   3'- -UAGCCUUAG-UCG-------UCCCGgCGCUG----UAG- -5'
18788 5' -56.7 NC_004683.1 + 31293 0.68 0.466518
Target:  5'- -cCGGGGguugugCAGCugcGGGCCGUGGCGg- -3'
miRNA:   3'- uaGCCUUa-----GUCGu--CCCGGCGCUGUag -5'
18788 5' -56.7 NC_004683.1 + 37487 0.68 0.47663
Target:  5'- -gUGGAcgCGGUAcGGGCCGCagcccGCGUCa -3'
miRNA:   3'- uaGCCUuaGUCGU-CCCGGCGc----UGUAG- -5'
18788 5' -56.7 NC_004683.1 + 49572 0.68 0.48685
Target:  5'- cGUCGGAuucaccagUAGCAGuGGCCGCauccuCGUCg -3'
miRNA:   3'- -UAGCCUua------GUCGUC-CCGGCGcu---GUAG- -5'
18788 5' -56.7 NC_004683.1 + 21211 0.68 0.497173
Target:  5'- uUCGGGAcCAGCAG---CGCGGCAUCa -3'
miRNA:   3'- uAGCCUUaGUCGUCccgGCGCUGUAG- -5'
18788 5' -56.7 NC_004683.1 + 49527 0.68 0.507593
Target:  5'- gGUCGGAuggaacgguGUCAGCGGcGGCggaUGCGAugcCAUCu -3'
miRNA:   3'- -UAGCCU---------UAGUCGUC-CCG---GCGCU---GUAG- -5'
18788 5' -56.7 NC_004683.1 + 49387 0.68 0.511786
Target:  5'- aGUCGGGgcgGUCAGCcacgGGucaguuccuccacguGuGCCGCGACGUCg -3'
miRNA:   3'- -UAGCCU---UAGUCG----UC---------------C-CGGCGCUGUAG- -5'
18788 5' -56.7 NC_004683.1 + 45472 0.67 0.539376
Target:  5'- gGUUGGcGGUCAGgGGuGGCCGUGACc-- -3'
miRNA:   3'- -UAGCC-UUAGUCgUC-CCGGCGCUGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.