Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18788 | 5' | -56.7 | NC_004683.1 | + | 3503 | 0.73 | 0.243834 |
Target: 5'- -cCGGAAUCGGUGGuGGCCGCGGu--- -3' miRNA: 3'- uaGCCUUAGUCGUC-CCGGCGCUguag -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 2415 | 0.65 | 0.634459 |
Target: 5'- -aCGGAAUUGGCGccugacacguucguGGGCCuuGCGACGc- -3' miRNA: 3'- uaGCCUUAGUCGU--------------CCCGG--CGCUGUag -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 5141 | 0.66 | 0.604683 |
Target: 5'- cAUCGaGAAgauGCAGGGCgccaGCGACAa- -3' miRNA: 3'- -UAGC-CUUaguCGUCCCGg---CGCUGUag -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 2741 | 0.66 | 0.604683 |
Target: 5'- -aCGGAuggugcGCGGcGGCCGCGGCGa- -3' miRNA: 3'- uaGCCUuagu--CGUC-CCGGCGCUGUag -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 20271 | 0.67 | 0.568541 |
Target: 5'- cGUCGGAuuccuggccUCAGCauccaaacccggccGGGGCgGCGACGg- -3' miRNA: 3'- -UAGCCUu--------AGUCG--------------UCCCGgCGCUGUag -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 39637 | 0.67 | 0.560937 |
Target: 5'- -cCGGggU-GGCgacccgAGGGCCGCuACGUCg -3' miRNA: 3'- uaGCCuuAgUCG------UCCCGGCGcUGUAG- -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 46593 | 0.67 | 0.550124 |
Target: 5'- -cUGGugcCGGUcgAGGGCCGCGACGg- -3' miRNA: 3'- uaGCCuuaGUCG--UCCCGGCGCUGUag -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 8379 | 0.67 | 0.550124 |
Target: 5'- -aCGGuGAUCGGCcccgcgcGGGCCGCGAUc-- -3' miRNA: 3'- uaGCC-UUAGUCGu------CCCGGCGCUGuag -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 49527 | 0.68 | 0.507593 |
Target: 5'- gGUCGGAuggaacgguGUCAGCGGcGGCggaUGCGAugcCAUCu -3' miRNA: 3'- -UAGCCU---------UAGUCGUC-CCG---GCGCU---GUAG- -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 18249 | 0.71 | 0.314283 |
Target: 5'- uGUCGGGAUCGGCAaggcGGuGCC-CGGCGUg -3' miRNA: 3'- -UAGCCUUAGUCGU----CC-CGGcGCUGUAg -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 3238 | 0.7 | 0.380995 |
Target: 5'- cGUCGGAcuGUCcgagGGCcuGGCCGCGGCGa- -3' miRNA: 3'- -UAGCCU--UAG----UCGucCCGGCGCUGUag -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 45535 | 0.7 | 0.389972 |
Target: 5'- -aCGGcagCAGCGGcGCCGCGACAa- -3' miRNA: 3'- uaGCCuuaGUCGUCcCGGCGCUGUag -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 31293 | 0.68 | 0.466518 |
Target: 5'- -cCGGGGguugugCAGCugcGGGCCGUGGCGg- -3' miRNA: 3'- uaGCCUUa-----GUCGu--CCCGGCGCUGUag -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 37487 | 0.68 | 0.47663 |
Target: 5'- -gUGGAcgCGGUAcGGGCCGCagcccGCGUCa -3' miRNA: 3'- uaGCCUuaGUCGU-CCCGGCGc----UGUAG- -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 49572 | 0.68 | 0.48685 |
Target: 5'- cGUCGGAuucaccagUAGCAGuGGCCGCauccuCGUCg -3' miRNA: 3'- -UAGCCUua------GUCGUC-CCGGCGcu---GUAG- -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 23817 | 0.66 | 0.626733 |
Target: 5'- gAUCGGggUCGGCgccGGGGUgGUGcCGc- -3' miRNA: 3'- -UAGCCuuAGUCG---UCCCGgCGCuGUag -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 56861 | 0.75 | 0.177157 |
Target: 5'- cUCGGGAccUCGGUAGcGGCUGCGGuCGUCg -3' miRNA: 3'- uAGCCUU--AGUCGUC-CCGGCGCU-GUAG- -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 14958 | 0.72 | 0.284392 |
Target: 5'- -gCGGGAUCAGCAGcacCCGCGaacGCAUCa -3' miRNA: 3'- uaGCCUUAGUCGUCcc-GGCGC---UGUAG- -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 23943 | 0.71 | 0.314283 |
Target: 5'- cUCGG--UCAGCGGGccgaagucGCCGuCGACGUCg -3' miRNA: 3'- uAGCCuuAGUCGUCC--------CGGC-GCUGUAG- -5' |
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18788 | 5' | -56.7 | NC_004683.1 | + | 52401 | 0.7 | 0.355753 |
Target: 5'- -cCGGAAUCGGCcguccuugagcgccuGGGCCagcuuuucgGCGGCGUCu -3' miRNA: 3'- uaGCCUUAGUCGu--------------CCCGG---------CGCUGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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