miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18797 5' -52.4 NC_004683.1 + 32860 0.66 0.879926
Target:  5'- -aGGGcGAGCUC-CC-ACGCGAUCGc- -3'
miRNA:   3'- caCUC-CUUGAGuGGcUGCGCUAGUag -5'
18797 5' -52.4 NC_004683.1 + 6880 0.66 0.863889
Target:  5'- -cGcuGGACggcgCGCgaCGGCGCGAUCGUCg -3'
miRNA:   3'- caCucCUUGa---GUG--GCUGCGCUAGUAG- -5'
18797 5' -52.4 NC_004683.1 + 20195 0.66 0.863889
Target:  5'- --cAGGAACg-ACCGGCGgGGUCAccUCg -3'
miRNA:   3'- cacUCCUUGagUGGCUGCgCUAGU--AG- -5'
18797 5' -52.4 NC_004683.1 + 16425 0.66 0.863889
Target:  5'- uUGAGGAACUCGuuGAUGCc------ -3'
miRNA:   3'- cACUCCUUGAGUggCUGCGcuaguag -5'
18797 5' -52.4 NC_004683.1 + 56183 0.66 0.846849
Target:  5'- -cGAGGAcgauggcccAUUCACUGGCGUGGUUg-- -3'
miRNA:   3'- caCUCCU---------UGAGUGGCUGCGCUAGuag -5'
18797 5' -52.4 NC_004683.1 + 33268 0.66 0.837974
Target:  5'- -cGAGGAaaaGCUgACgGugGUGAUCGa- -3'
miRNA:   3'- caCUCCU---UGAgUGgCugCGCUAGUag -5'
18797 5' -52.4 NC_004683.1 + 52651 0.66 0.837974
Target:  5'- -cGAGGAACgCGCCGaACGC-AUCGc- -3'
miRNA:   3'- caCUCCUUGaGUGGC-UGCGcUAGUag -5'
18797 5' -52.4 NC_004683.1 + 50671 0.66 0.837074
Target:  5'- -cGAGGGAacacgUCGCCGAcgaucaaCGCGAugUCGUCc -3'
miRNA:   3'- caCUCCUUg----AGUGGCU-------GCGCU--AGUAG- -5'
18797 5' -52.4 NC_004683.1 + 53229 0.67 0.810041
Target:  5'- gGUGAGcGGugUCGggGGCGCGAaCGUCg -3'
miRNA:   3'- -CACUC-CUugAGUggCUGCGCUaGUAG- -5'
18797 5' -52.4 NC_004683.1 + 28955 0.67 0.809079
Target:  5'- -cGAGGAGCUCccacaacAUCGAUGCGGcUUAUUu -3'
miRNA:   3'- caCUCCUUGAG-------UGGCUGCGCU-AGUAG- -5'
18797 5' -52.4 NC_004683.1 + 51601 0.67 0.800329
Target:  5'- cGUGAuGGAucaGgUCGCCGAUGcCGAUCGc- -3'
miRNA:   3'- -CACU-CCU---UgAGUGGCUGC-GCUAGUag -5'
18797 5' -52.4 NC_004683.1 + 53660 0.67 0.800329
Target:  5'- cUGAGGcugcACUCACagaGGCGCGAcUCcgCg -3'
miRNA:   3'- cACUCCu---UGAGUGg--CUGCGCU-AGuaG- -5'
18797 5' -52.4 NC_004683.1 + 3805 0.68 0.780366
Target:  5'- gGUGAGGccgucguuuGGCUCACCGuccuCGCcggCAUCg -3'
miRNA:   3'- -CACUCC---------UUGAGUGGCu---GCGcuaGUAG- -5'
18797 5' -52.4 NC_004683.1 + 54080 0.68 0.77014
Target:  5'- gGUGuGGAGCgUCACCGGCGa-GUCGa- -3'
miRNA:   3'- -CACuCCUUG-AGUGGCUGCgcUAGUag -5'
18797 5' -52.4 NC_004683.1 + 10363 0.68 0.749257
Target:  5'- -aGaAGGcgUUCGCCGACGCGggCAa- -3'
miRNA:   3'- caC-UCCuuGAGUGGCUGCGCuaGUag -5'
18797 5' -52.4 NC_004683.1 + 1780 0.69 0.717036
Target:  5'- uUGAGGucaggcagcAGCgCGCCGGCcgcgcuGCGAUCGUCg -3'
miRNA:   3'- cACUCC---------UUGaGUGGCUG------CGCUAGUAG- -5'
18797 5' -52.4 NC_004683.1 + 23078 0.69 0.717036
Target:  5'- ---uGGuGCUCACCGGCGCGcUC-UCg -3'
miRNA:   3'- cacuCCuUGAGUGGCUGCGCuAGuAG- -5'
18797 5' -52.4 NC_004683.1 + 13955 0.69 0.684031
Target:  5'- -cGAGGugccGCgugaugucagCGCCGGCGCGGUCcUCg -3'
miRNA:   3'- caCUCCu---UGa---------GUGGCUGCGCUAGuAG- -5'
18797 5' -52.4 NC_004683.1 + 13862 0.7 0.66175
Target:  5'- -cGAGGAcCgCGCCGGCGCuGA-CAUCa -3'
miRNA:   3'- caCUCCUuGaGUGGCUGCG-CUaGUAG- -5'
18797 5' -52.4 NC_004683.1 + 7915 0.7 0.66175
Target:  5'- -cGGcGGAACUCGCCGuCGuCGAUC-UCc -3'
miRNA:   3'- caCU-CCUUGAGUGGCuGC-GCUAGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.