miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18818 3' -63.3 NC_004683.1 + 12225 0.68 0.248395
Target:  5'- aCGGCUUgGCCGaaUCGGCccuGCcuGCGUCg -3'
miRNA:   3'- aGCCGGAgCGGC--AGCCGcu-CG--CGCAG- -5'
18818 3' -63.3 NC_004683.1 + 12316 0.69 0.212143
Target:  5'- aUCGGCa-CGCCGggcgcucccgcccCGGCGGGCGUGg- -3'
miRNA:   3'- -AGCCGgaGCGGCa------------GCCGCUCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 12327 0.66 0.345309
Target:  5'- gUCGGU---GCUGUCGGCGcGCaacaGCGUCg -3'
miRNA:   3'- -AGCCGgagCGGCAGCCGCuCG----CGCAG- -5'
18818 3' -63.3 NC_004683.1 + 12657 0.77 0.055714
Target:  5'- -gGGCC-CGCUGUCGGCGAucaGCGCGg- -3'
miRNA:   3'- agCCGGaGCGGCAGCCGCU---CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 13259 0.66 0.361185
Target:  5'- aUCGGCgUCGCCGUCGacCGcAGCGg--- -3'
miRNA:   3'- -AGCCGgAGCGGCAGCc-GC-UCGCgcag -5'
18818 3' -63.3 NC_004683.1 + 13602 0.66 0.329939
Target:  5'- aUCGGCuaugcgggccagCUCGCCGgcaUCGGCGucuCGgGUCu -3'
miRNA:   3'- -AGCCG------------GAGCGGC---AGCCGCuc-GCgCAG- -5'
18818 3' -63.3 NC_004683.1 + 13717 0.66 0.33756
Target:  5'- cCGGUUUCGCCGgugcgCGGCcuGCGCu-- -3'
miRNA:   3'- aGCCGGAGCGGCa----GCCGcuCGCGcag -5'
18818 3' -63.3 NC_004683.1 + 18200 0.66 0.369312
Target:  5'- gCGGUaggUGCCGgCGGCGAcCGCGaUCg -3'
miRNA:   3'- aGCCGga-GCGGCaGCCGCUcGCGC-AG- -5'
18818 3' -63.3 NC_004683.1 + 18555 0.74 0.09813
Target:  5'- uUCGGCgUCuGCCGcauccauUCGGgGAGCGgGUCg -3'
miRNA:   3'- -AGCCGgAG-CGGC-------AGCCgCUCGCgCAG- -5'
18818 3' -63.3 NC_004683.1 + 19146 0.71 0.153968
Target:  5'- gUCGGUggCGUCGUgGGUGAGC-CGUCa -3'
miRNA:   3'- -AGCCGgaGCGGCAgCCGCUCGcGCAG- -5'
18818 3' -63.3 NC_004683.1 + 19229 0.7 0.188979
Target:  5'- gUGGCCgcCGCCGggUCGaacGCGGuGCGCGUCg -3'
miRNA:   3'- aGCCGGa-GCGGC--AGC---CGCU-CGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 19772 0.66 0.33756
Target:  5'- -aGGUUgugCGCCagugauugcagGUUGGCGAGCGCuUCg -3'
miRNA:   3'- agCCGGa--GCGG-----------CAGCCGCUCGCGcAG- -5'
18818 3' -63.3 NC_004683.1 + 20300 0.71 0.153968
Target:  5'- cCGGCCggggCGgCGaCGGCGgcAGCGCGUUc -3'
miRNA:   3'- aGCCGGa---GCgGCaGCCGC--UCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 22420 0.71 0.166351
Target:  5'- cCGGCUcgGCCugGUCGGCGAcgGCGCGUa -3'
miRNA:   3'- aGCCGGagCGG--CAGCCGCU--CGCGCAg -5'
18818 3' -63.3 NC_004683.1 + 22698 0.67 0.286894
Target:  5'- aUCGGgCUCuaCGcCGGUucGAcGCGCGUCg -3'
miRNA:   3'- -AGCCgGAGcgGCaGCCG--CU-CGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 23047 0.66 0.361185
Target:  5'- gUCGGUCUCGgUGUCGGCcuGCucgGCGg- -3'
miRNA:   3'- -AGCCGGAGCgGCAGCCGcuCG---CGCag -5'
18818 3' -63.3 NC_004683.1 + 24235 0.69 0.230801
Target:  5'- gCGGCCUUGUgcagGUCGGCGAuCGCcUCg -3'
miRNA:   3'- aGCCGGAGCGg---CAGCCGCUcGCGcAG- -5'
18818 3' -63.3 NC_004683.1 + 24465 0.66 0.329939
Target:  5'- gUGGCCUCGUCGaagacacCGGUGAuCGCGa- -3'
miRNA:   3'- aGCCGGAGCGGCa------GCCGCUcGCGCag -5'
18818 3' -63.3 NC_004683.1 + 24759 0.69 0.219664
Target:  5'- aUGGCCUCGaugaCGUCGGgGuuGGUGCG-Ca -3'
miRNA:   3'- aGCCGGAGCg---GCAGCCgC--UCGCGCaG- -5'
18818 3' -63.3 NC_004683.1 + 24880 0.68 0.267084
Target:  5'- cUCGccGCCgUCGCCGaagaGGUgcucGAGCGCGUCc -3'
miRNA:   3'- -AGC--CGG-AGCGGCag--CCG----CUCGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.