miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18818 3' -63.3 NC_004683.1 + 391 0.66 0.353184
Target:  5'- cUGGCgUCGCUGUCGaaagagcuGCGGGCG-GUg -3'
miRNA:   3'- aGCCGgAGCGGCAGC--------CGCUCGCgCAg -5'
18818 3' -63.3 NC_004683.1 + 861 0.66 0.353184
Target:  5'- --uGCCUCGCgUGUCGGCGucaucucGUGCGcCg -3'
miRNA:   3'- agcCGGAGCG-GCAGCCGCu------CGCGCaG- -5'
18818 3' -63.3 NC_004683.1 + 1729 0.72 0.134121
Target:  5'- cUCGGCUUCGagGUCGGCGAcgaggugacaaacgGCGCGg- -3'
miRNA:   3'- -AGCCGGAGCggCAGCCGCU--------------CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 2119 0.69 0.203821
Target:  5'- gUGGCCaUCGCCcugguggUGGCGGGCGUGg- -3'
miRNA:   3'- aGCCGG-AGCGGca-----GCCGCUCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 2615 0.67 0.307842
Target:  5'- aCGGCUUC-CCGUCGcGCaAGCGCu-- -3'
miRNA:   3'- aGCCGGAGcGGCAGC-CGcUCGCGcag -5'
18818 3' -63.3 NC_004683.1 + 3366 0.68 0.24241
Target:  5'- gUCGGCCa-GgCGUCGGCGGGCcugccCGUa -3'
miRNA:   3'- -AGCCGGagCgGCAGCCGCUCGc----GCAg -5'
18818 3' -63.3 NC_004683.1 + 4473 0.66 0.356369
Target:  5'- cUCGGCCucaucggcgugggacUCGUCGUCgcuGGCGucucgcuGCGCGg- -3'
miRNA:   3'- -AGCCGG---------------AGCGGCAG---CCGCu------CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 4927 0.66 0.353184
Target:  5'- aUCGGCaa-GCCucagagCGGCGGccagcggcgcauGCGCGUCg -3'
miRNA:   3'- -AGCCGgagCGGca----GCCGCU------------CGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 5085 0.7 0.198764
Target:  5'- uUCGGCCgugaCGCCGaagaggUCaagGGCGAGCuGCGUg -3'
miRNA:   3'- -AGCCGGa---GCGGC------AG---CCGCUCG-CGCAg -5'
18818 3' -63.3 NC_004683.1 + 5754 0.69 0.214269
Target:  5'- aCGGCCUCgagcucguccuuGCCuUCGGCGAacagcaGCGCGa- -3'
miRNA:   3'- aGCCGGAG------------CGGcAGCCGCU------CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 5911 0.69 0.236546
Target:  5'- gCGGCggUGCCGcgCGGCGAGCuGC-UCg -3'
miRNA:   3'- aGCCGgaGCGGCa-GCCGCUCG-CGcAG- -5'
18818 3' -63.3 NC_004683.1 + 6628 0.68 0.24241
Target:  5'- cUCGGCCggCGCCuguGUgGuuGCGGGCGCGg- -3'
miRNA:   3'- -AGCCGGa-GCGG---CAgC--CGCUCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 6743 0.68 0.273562
Target:  5'- gCGGCg-CGCCG-CGGCcAGCacgGCGUCg -3'
miRNA:   3'- aGCCGgaGCGGCaGCCGcUCG---CGCAG- -5'
18818 3' -63.3 NC_004683.1 + 7063 0.66 0.345309
Target:  5'- cUCGGUCUCGaCGUC--UGGGCGCGcCg -3'
miRNA:   3'- -AGCCGGAGCgGCAGccGCUCGCGCaG- -5'
18818 3' -63.3 NC_004683.1 + 8176 0.69 0.208989
Target:  5'- cCaGCCUCgggGUCGUCGGCGccgucgAGCGgGUCa -3'
miRNA:   3'- aGcCGGAG---CGGCAGCCGC------UCGCgCAG- -5'
18818 3' -63.3 NC_004683.1 + 8239 0.73 0.10659
Target:  5'- gCGGCCuUCGCgGccUCGGCgccGAGCGCGUa -3'
miRNA:   3'- aGCCGG-AGCGgC--AGCCG---CUCGCGCAg -5'
18818 3' -63.3 NC_004683.1 + 8553 0.67 0.31508
Target:  5'- cCGGCCugaUCGCCGU-GGCGuucCGCGa- -3'
miRNA:   3'- aGCCGG---AGCGGCAgCCGCuc-GCGCag -5'
18818 3' -63.3 NC_004683.1 + 9328 0.69 0.219664
Target:  5'- -gGGUCUUacgaGCCGUcgcCGGCcAGCGCGUCc -3'
miRNA:   3'- agCCGGAG----CGGCA---GCCGcUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 10256 0.66 0.353184
Target:  5'- aCGcGCCUCGC--UCGGCGAGaugaacaCGUCg -3'
miRNA:   3'- aGC-CGGAGCGgcAGCCGCUCgc-----GCAG- -5'
18818 3' -63.3 NC_004683.1 + 10957 0.71 0.162127
Target:  5'- aUCGGCaaUGCCGUUGGCGAGCa---- -3'
miRNA:   3'- -AGCCGgaGCGGCAGCCGCUCGcgcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.