miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18818 3' -63.3 NC_004683.1 + 40877 1.09 0.000194
Target:  5'- cUCGGCCUCGCCGUCGGCGAGCGCGUCg -3'
miRNA:   3'- -AGCCGGAGCGGCAGCCGCUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 44804 0.9 0.005836
Target:  5'- gUCGGCCUCGgcguagugguaCGUCGGCGGGCGCGUCa -3'
miRNA:   3'- -AGCCGGAGCg----------GCAGCCGCUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 51588 0.78 0.045976
Target:  5'- gUCGccgauGCCgaucgCGCgGUCGGUGGGCGCGUCg -3'
miRNA:   3'- -AGC-----CGGa----GCGgCAGCCGCUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 12657 0.77 0.055714
Target:  5'- -gGGCC-CGCUGUCGGCGAucaGCGCGg- -3'
miRNA:   3'- agCCGGaGCGGCAGCCGCU---CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 41276 0.74 0.090793
Target:  5'- gCGGCCuUCGCCGcgUCGGCGGGUGUc-- -3'
miRNA:   3'- aGCCGG-AGCGGC--AGCCGCUCGCGcag -5'
18818 3' -63.3 NC_004683.1 + 43159 0.74 0.095795
Target:  5'- cUCGGCCUCGCCGUCaGGauuggcgaagauCGGGCcgGCuGUCg -3'
miRNA:   3'- -AGCCGGAGCGGCAG-CC------------GCUCG--CG-CAG- -5'
18818 3' -63.3 NC_004683.1 + 18555 0.74 0.09813
Target:  5'- uUCGGCgUCuGCCGcauccauUCGGgGAGCGgGUCg -3'
miRNA:   3'- -AGCCGgAG-CGGC-------AGCCgCUCGCgCAG- -5'
18818 3' -63.3 NC_004683.1 + 33321 0.74 0.101056
Target:  5'- gCGaCCUgGCCGcggaucUgGGCGAGCGCGUCg -3'
miRNA:   3'- aGCcGGAgCGGC------AgCCGCUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 8239 0.73 0.10659
Target:  5'- gCGGCCuUCGCgGccUCGGCgccGAGCGCGUa -3'
miRNA:   3'- aGCCGG-AGCGgC--AGCCG---CUCGCGCAg -5'
18818 3' -63.3 NC_004683.1 + 44939 0.72 0.124941
Target:  5'- cUCGGCCUCcagGCCGggccaccaCGGCGAuuGCGCGa- -3'
miRNA:   3'- -AGCCGGAG---CGGCa-------GCCGCU--CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 42636 0.72 0.131683
Target:  5'- cUCGGCCUCGCucauggugugCGUCGcGCG-GCGCcacucGUCg -3'
miRNA:   3'- -AGCCGGAGCG----------GCAGC-CGCuCGCG-----CAG- -5'
18818 3' -63.3 NC_004683.1 + 1729 0.72 0.134121
Target:  5'- cUCGGCUUCGagGUCGGCGAcgaggugacaaacgGCGCGg- -3'
miRNA:   3'- -AGCCGGAGCggCAGCCGCU--------------CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 39243 0.72 0.142427
Target:  5'- cUCGGCCUUGgCGaCGaGCG-GUGCGUCc -3'
miRNA:   3'- -AGCCGGAGCgGCaGC-CGCuCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 39956 0.71 0.15003
Target:  5'- gUUGGCgCUCGCCGgcuGGUGAcuCGCGUCg -3'
miRNA:   3'- -AGCCG-GAGCGGCag-CCGCUc-GCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 20300 0.71 0.153968
Target:  5'- cCGGCCggggCGgCGaCGGCGgcAGCGCGUUc -3'
miRNA:   3'- aGCCGGa---GCgGCaGCCGC--UCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 19146 0.71 0.153968
Target:  5'- gUCGGUggCGUCGUgGGUGAGC-CGUCa -3'
miRNA:   3'- -AGCCGgaGCGGCAgCCGCUCGcGCAG- -5'
18818 3' -63.3 NC_004683.1 + 44359 0.71 0.158
Target:  5'- gUCGGCgcggaUCGCCG-CGuCGAGCcGCGUCg -3'
miRNA:   3'- -AGCCGg----AGCGGCaGCcGCUCG-CGCAG- -5'
18818 3' -63.3 NC_004683.1 + 10957 0.71 0.162127
Target:  5'- aUCGGCaaUGCCGUUGGCGAGCa---- -3'
miRNA:   3'- -AGCCGgaGCGGCAGCCGCUCGcgcag -5'
18818 3' -63.3 NC_004683.1 + 22420 0.71 0.166351
Target:  5'- cCGGCUcgGCCugGUCGGCGAcgGCGCGUa -3'
miRNA:   3'- aGCCGGagCGG--CAGCCGCU--CGCGCAg -5'
18818 3' -63.3 NC_004683.1 + 44679 0.71 0.170673
Target:  5'- uUC-GCCUCGUCGaacgugaggUCGGCGGcGCGCGUg -3'
miRNA:   3'- -AGcCGGAGCGGC---------AGCCGCU-CGCGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.