miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18818 3' -63.3 NC_004683.1 + 391 0.66 0.353184
Target:  5'- cUGGCgUCGCUGUCGaaagagcuGCGGGCG-GUg -3'
miRNA:   3'- aGCCGgAGCGGCAGC--------CGCUCGCgCAg -5'
18818 3' -63.3 NC_004683.1 + 18200 0.66 0.369312
Target:  5'- gCGGUaggUGCCGgCGGCGAcCGCGaUCg -3'
miRNA:   3'- aGCCGga-GCGGCaGCCGCUcGCGC-AG- -5'
18818 3' -63.3 NC_004683.1 + 46683 0.66 0.321703
Target:  5'- gCGGCCUUGCCGUCgcggcccucgaccGGCaccAGCaGCGg- -3'
miRNA:   3'- aGCCGGAGCGGCAG-------------CCGc--UCG-CGCag -5'
18818 3' -63.3 NC_004683.1 + 7063 0.66 0.345309
Target:  5'- cUCGGUCUCGaCGUC--UGGGCGCGcCg -3'
miRNA:   3'- -AGCCGGAGCgGCAGccGCUCGCGCaG- -5'
18818 3' -63.3 NC_004683.1 + 53713 0.66 0.322446
Target:  5'- gCGGCCagGUCG-CGGCGGGCcugaucGCGcCg -3'
miRNA:   3'- aGCCGGagCGGCaGCCGCUCG------CGCaG- -5'
18818 3' -63.3 NC_004683.1 + 56442 0.66 0.329939
Target:  5'- aUGGCCUuggugcUGUCGUgGGUGAGCagccCGUCg -3'
miRNA:   3'- aGCCGGA------GCGGCAgCCGCUCGc---GCAG- -5'
18818 3' -63.3 NC_004683.1 + 13602 0.66 0.329939
Target:  5'- aUCGGCuaugcgggccagCUCGCCGgcaUCGGCGucuCGgGUCu -3'
miRNA:   3'- -AGCCG------------GAGCGGC---AGCCGCuc-GCgCAG- -5'
18818 3' -63.3 NC_004683.1 + 53600 0.66 0.33756
Target:  5'- cCGGCCgcgucuUCGCCGcCGaGCugcGGCGCGaUCa -3'
miRNA:   3'- aGCCGG------AGCGGCaGC-CGc--UCGCGC-AG- -5'
18818 3' -63.3 NC_004683.1 + 13717 0.66 0.33756
Target:  5'- cCGGUUUCGCCGgugcgCGGCcuGCGCu-- -3'
miRNA:   3'- aGCCGGAGCGGCa----GCCGcuCGCGcag -5'
18818 3' -63.3 NC_004683.1 + 24465 0.66 0.329939
Target:  5'- gUGGCCUCGUCGaagacacCGGUGAuCGCGa- -3'
miRNA:   3'- aGCCGGAGCGGCa------GCCGCUcGCGCag -5'
18818 3' -63.3 NC_004683.1 + 40599 0.66 0.33756
Target:  5'- gUGGCC-CGCCGagGG-GGGCGCcGUg -3'
miRNA:   3'- aGCCGGaGCGGCagCCgCUCGCG-CAg -5'
18818 3' -63.3 NC_004683.1 + 19772 0.66 0.33756
Target:  5'- -aGGUUgugCGCCagugauugcagGUUGGCGAGCGCuUCg -3'
miRNA:   3'- agCCGGa--GCGG-----------CAGCCGCUCGCGcAG- -5'
18818 3' -63.3 NC_004683.1 + 4927 0.66 0.353184
Target:  5'- aUCGGCaa-GCCucagagCGGCGGccagcggcgcauGCGCGUCg -3'
miRNA:   3'- -AGCCGgagCGGca----GCCGCU------------CGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 36114 0.66 0.353184
Target:  5'- gUCGGgcgaUCUCGUCGaUCGGCGAuCGCuauGUCg -3'
miRNA:   3'- -AGCC----GGAGCGGC-AGCCGCUcGCG---CAG- -5'
18818 3' -63.3 NC_004683.1 + 23047 0.66 0.361185
Target:  5'- gUCGGUCUCGgUGUCGGCcuGCucgGCGg- -3'
miRNA:   3'- -AGCCGGAGCgGCAGCCGcuCG---CGCag -5'
18818 3' -63.3 NC_004683.1 + 28641 0.66 0.361185
Target:  5'- aCGGCCgagacuuggCGgCGcUCGGCGuGC-CGUCu -3'
miRNA:   3'- aGCCGGa--------GCgGC-AGCCGCuCGcGCAG- -5'
18818 3' -63.3 NC_004683.1 + 31534 0.66 0.361185
Target:  5'- gUCGGCgUCGgccaCGcCGGCGAGCuCGg- -3'
miRNA:   3'- -AGCCGgAGCg---GCaGCCGCUCGcGCag -5'
18818 3' -63.3 NC_004683.1 + 43191 0.66 0.329939
Target:  5'- cCGGUCUCGggGUCGGUGuaguacAGCGCGa- -3'
miRNA:   3'- aGCCGGAGCggCAGCCGC------UCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 13259 0.66 0.361185
Target:  5'- aUCGGCgUCGCCGUCGacCGcAGCGg--- -3'
miRNA:   3'- -AGCCGgAGCGGCAGCc-GC-UCGCgcag -5'
18818 3' -63.3 NC_004683.1 + 40237 0.66 0.369312
Target:  5'- -aGGCCcgCGCCGagcugcaGGC--GCGCGUCg -3'
miRNA:   3'- agCCGGa-GCGGCag-----CCGcuCGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.