miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18818 3' -63.3 NC_004683.1 + 12327 0.66 0.345309
Target:  5'- gUCGGU---GCUGUCGGCGcGCaacaGCGUCg -3'
miRNA:   3'- -AGCCGgagCGGCAGCCGCuCG----CGCAG- -5'
18818 3' -63.3 NC_004683.1 + 43849 0.68 0.254502
Target:  5'- cUCGGUCUCGagcCCGgugucaaCGGCGAGUGCu-- -3'
miRNA:   3'- -AGCCGGAGC---GGCa------GCCGCUCGCGcag -5'
18818 3' -63.3 NC_004683.1 + 37850 0.68 0.260731
Target:  5'- gCGGCCgccugggUGUCGUCGGCGugaaGGUGaGUCg -3'
miRNA:   3'- aGCCGGa------GCGGCAGCCGC----UCGCgCAG- -5'
18818 3' -63.3 NC_004683.1 + 22698 0.67 0.286894
Target:  5'- aUCGGgCUCuaCGcCGGUucGAcGCGCGUCg -3'
miRNA:   3'- -AGCCgGAGcgGCaGCCG--CU-CGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 8553 0.67 0.31508
Target:  5'- cCGGCCugaUCGCCGU-GGCGuucCGCGa- -3'
miRNA:   3'- aGCCGG---AGCGGCAgCCGCuc-GCGCag -5'
18818 3' -63.3 NC_004683.1 + 52223 0.67 0.31508
Target:  5'- gUCGGUCgggucCGCC-UCGGCGAcccgggccgGCGCGg- -3'
miRNA:   3'- -AGCCGGa----GCGGcAGCCGCU---------CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 13602 0.66 0.329939
Target:  5'- aUCGGCuaugcgggccagCUCGCCGgcaUCGGCGucuCGgGUCu -3'
miRNA:   3'- -AGCCG------------GAGCGGC---AGCCGCuc-GCgCAG- -5'
18818 3' -63.3 NC_004683.1 + 53600 0.66 0.33756
Target:  5'- cCGGCCgcgucuUCGCCGcCGaGCugcGGCGCGaUCa -3'
miRNA:   3'- aGCCGG------AGCGGCaGC-CGc--UCGCGC-AG- -5'
18818 3' -63.3 NC_004683.1 + 13717 0.66 0.33756
Target:  5'- cCGGUUUCGCCGgugcgCGGCcuGCGCu-- -3'
miRNA:   3'- aGCCGGAGCGGCa----GCCGcuCGCGcag -5'
18818 3' -63.3 NC_004683.1 + 26329 0.69 0.225174
Target:  5'- aUCGaCCggCGCUGUCGGCG-GUGCGa- -3'
miRNA:   3'- -AGCcGGa-GCGGCAGCCGCuCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 32954 0.69 0.214269
Target:  5'- aUUGGCCUCGauCCgGUCGaCGAGUGCGg- -3'
miRNA:   3'- -AGCCGGAGC--GG-CAGCcGCUCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 2119 0.69 0.203821
Target:  5'- gUGGCCaUCGCCcugguggUGGCGGGCGUGg- -3'
miRNA:   3'- aGCCGG-AGCGGca-----GCCGCUCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 33321 0.74 0.101056
Target:  5'- gCGaCCUgGCCGcggaucUgGGCGAGCGCGUCg -3'
miRNA:   3'- aGCcGGAgCGGC------AgCCGCUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 1729 0.72 0.134121
Target:  5'- cUCGGCUUCGagGUCGGCGAcgaggugacaaacgGCGCGg- -3'
miRNA:   3'- -AGCCGGAGCggCAGCCGCU--------------CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 39956 0.71 0.15003
Target:  5'- gUUGGCgCUCGCCGgcuGGUGAcuCGCGUCg -3'
miRNA:   3'- -AGCCG-GAGCGGCag-CCGCUc-GCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 20300 0.71 0.153968
Target:  5'- cCGGCCggggCGgCGaCGGCGgcAGCGCGUUc -3'
miRNA:   3'- aGCCGGa---GCgGCaGCCGC--UCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 22420 0.71 0.166351
Target:  5'- cCGGCUcgGCCugGUCGGCGAcgGCGCGUa -3'
miRNA:   3'- aGCCGGagCGG--CAGCCGCU--CGCGCAg -5'
18818 3' -63.3 NC_004683.1 + 19229 0.7 0.188979
Target:  5'- gUGGCCgcCGCCGggUCGaacGCGGuGCGCGUCg -3'
miRNA:   3'- aGCCGGa-GCGGC--AGC---CGCU-CGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 42728 0.7 0.193817
Target:  5'- -gGGgCUCGCUGUCGGUauccGGCGCGa- -3'
miRNA:   3'- agCCgGAGCGGCAGCCGc---UCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 5085 0.7 0.198764
Target:  5'- uUCGGCCgugaCGCCGaagaggUCaagGGCGAGCuGCGUg -3'
miRNA:   3'- -AGCCGGa---GCGGC------AG---CCGCUCG-CGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.