miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18825 3' -61.3 NC_004683.1 + 15893 0.7 0.263181
Target:  5'- uUCGGCaagGGUC-GCGGUCaCaGCGGCCCu -3'
miRNA:   3'- -GGCUG---CCAGaCGCCAGcGcCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 18367 0.67 0.41556
Target:  5'- gCGACGGUCUaccugauggccGagaaGGUCgGCGGUgcGGCCa -3'
miRNA:   3'- gGCUGCCAGA-----------Cg---CCAG-CGCCG--UCGGg -5'
18825 3' -61.3 NC_004683.1 + 20022 0.72 0.205708
Target:  5'- -gGGCGGUg-GUGGUCGCGGcCAGaCCg -3'
miRNA:   3'- ggCUGCCAgaCGCCAGCGCC-GUCgGG- -5'
18825 3' -61.3 NC_004683.1 + 20086 0.67 0.41556
Target:  5'- gUCGAUGGUggccucgGCGGuaUCGaCGGCGGCUa -3'
miRNA:   3'- -GGCUGCCAga-----CGCC--AGC-GCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 20299 0.66 0.433509
Target:  5'- cCCGGcCGGg--GCGGcgacgGCGGCAGCgCg -3'
miRNA:   3'- -GGCU-GCCagaCGCCag---CGCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 20569 0.66 0.442651
Target:  5'- cCUGGCGGg--GCgucuGGUgGCGGCGGUgCg -3'
miRNA:   3'- -GGCUGCCagaCG----CCAgCGCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 21572 0.69 0.296513
Target:  5'- gCGGCGGUg-GCGGgCGCGGCAuGaucaCCa -3'
miRNA:   3'- gGCUGCCAgaCGCCaGCGCCGU-Cg---GG- -5'
18825 3' -61.3 NC_004683.1 + 21694 0.73 0.155351
Target:  5'- aCCGGggUGGUCggUGCGGguggCGCuGGCAGCgCCg -3'
miRNA:   3'- -GGCU--GCCAG--ACGCCa---GCG-CCGUCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 21943 0.7 0.276134
Target:  5'- cCCGGCGGUg-GCGG--GCGGCcGCCg -3'
miRNA:   3'- -GGCUGCCAgaCGCCagCGCCGuCGGg -5'
18825 3' -61.3 NC_004683.1 + 23040 0.68 0.347751
Target:  5'- cCCGugGGUCggucuCGGugUCGgccugcuCGGCGGCCUg -3'
miRNA:   3'- -GGCugCCAGac---GCC--AGC-------GCCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 23355 0.69 0.303561
Target:  5'- gCCGGggacCGGgCUGCGGUCGa-GCAGUUCg -3'
miRNA:   3'- -GGCU----GCCaGACGCCAGCgcCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 23693 0.69 0.313642
Target:  5'- gCCGACGGguUCUcgacguuccgccgcgGCGGcaccgGCGGCGGCaCCa -3'
miRNA:   3'- -GGCUGCC--AGA---------------CGCCag---CGCCGUCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 24796 0.82 0.036103
Target:  5'- gUCGACGcGggcgUUGCGGUCGCGGCGGCgCg -3'
miRNA:   3'- -GGCUGC-Ca---GACGCCAGCGCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 25114 0.68 0.364552
Target:  5'- cCCGGCGGcgUUGcCGGUCcUGGCcGCCg -3'
miRNA:   3'- -GGCUGCCa-GAC-GCCAGcGCCGuCGGg -5'
18825 3' -61.3 NC_004683.1 + 25546 0.66 0.459376
Target:  5'- cUCGGCcuGGUCgccgcccuggccGCGGUCGgcaacggcaCGGCGGCCg -3'
miRNA:   3'- -GGCUG--CCAGa-----------CGCCAGC---------GCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 25558 0.68 0.348539
Target:  5'- gCGACGGcCaGCGc-CGCGGUGGCCa -3'
miRNA:   3'- gGCUGCCaGaCGCcaGCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 25646 0.67 0.38951
Target:  5'- gCCGcCGaUC-GCGGUgGCGGUccuGCCCa -3'
miRNA:   3'- -GGCuGCcAGaCGCCAgCGCCGu--CGGG- -5'
18825 3' -61.3 NC_004683.1 + 25716 0.7 0.256891
Target:  5'- aCCG-CGaUCgGCGGcagcUCGCGGUAGCUCa -3'
miRNA:   3'- -GGCuGCcAGaCGCC----AGCGCCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 26333 0.7 0.275475
Target:  5'- aCCGGCGcuGUCgGCGGUgcgaggcCGCGuuGGCCCu -3'
miRNA:   3'- -GGCUGC--CAGaCGCCA-------GCGCcgUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 28637 0.66 0.4519
Target:  5'- gCCGACGGcCgagacuugGCGG-CGCucGGCGuGCCg -3'
miRNA:   3'- -GGCUGCCaGa-------CGCCaGCG--CCGU-CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.