miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18825 3' -61.3 NC_004683.1 + 250 0.66 0.4519
Target:  5'- aCCGGCGGcugCUGgGGUgucgaCGCcgaGGCGcuuGCCCc -3'
miRNA:   3'- -GGCUGCCa--GACgCCA-----GCG---CCGU---CGGG- -5'
18825 3' -61.3 NC_004683.1 + 325 0.66 0.480264
Target:  5'- cCCGccGCGGgcagcagCgGCGGcaUCGCGGC-GCUCg -3'
miRNA:   3'- -GGC--UGCCa------GaCGCC--AGCGCCGuCGGG- -5'
18825 3' -61.3 NC_004683.1 + 431 0.67 0.41556
Target:  5'- -aGGCGGUg-GCuGG-CGCGGCGGUCg -3'
miRNA:   3'- ggCUGCCAgaCG-CCaGCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 2741 0.73 0.172225
Target:  5'- aCgGAUGGUgCgcgGCGGcCGCGGCgAGCUCg -3'
miRNA:   3'- -GgCUGCCA-Ga--CGCCaGCGCCG-UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 3184 0.69 0.315836
Target:  5'- gCG-CGG-CgGCGGUgagacacgcauugcCGCGGCAGCCg -3'
miRNA:   3'- gGCuGCCaGaCGCCA--------------GCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 3355 0.7 0.274159
Target:  5'- gUCGGCGGgcCUGCccguaguuugaguaGGUCGCcGCGGCCa -3'
miRNA:   3'- -GGCUGCCa-GACG--------------CCAGCGcCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 4541 0.66 0.480264
Target:  5'- uCCGAgCGGguggaucgCUGCGcGUCGuCGGacuCGGCCg -3'
miRNA:   3'- -GGCU-GCCa-------GACGC-CAGC-GCC---GUCGGg -5'
18825 3' -61.3 NC_004683.1 + 5257 0.66 0.480264
Target:  5'- cUCGAUGaUCU-UGGUgGCGGCGGCgCg -3'
miRNA:   3'- -GGCUGCcAGAcGCCAgCGCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 5804 0.68 0.372747
Target:  5'- cCUGGCGGaugUCUacGCGGUCuaCGaGCAGCUCg -3'
miRNA:   3'- -GGCUGCC---AGA--CGCCAGc-GC-CGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 6950 0.72 0.19909
Target:  5'- aCUGGCGG-CggGCGGUgGUgcagcucgucggccGGCGGCCCa -3'
miRNA:   3'- -GGCUGCCaGa-CGCCAgCG--------------CCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 9577 0.7 0.250725
Target:  5'- uCCGGCGGcaucaaCUGUGGguuCGGCAGCUCc -3'
miRNA:   3'- -GGCUGCCa-----GACGCCagcGCCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 10205 0.66 0.442651
Target:  5'- gCCGGCGuacUUGCuGG-CGCGGUAGgCCg -3'
miRNA:   3'- -GGCUGCca-GACG-CCaGCGCCGUCgGG- -5'
18825 3' -61.3 NC_004683.1 + 10715 0.69 0.325473
Target:  5'- gCGugGGUCacUGUcuGGUaucggCGCGGCGGgCCa -3'
miRNA:   3'- gGCugCCAG--ACG--CCA-----GCGCCGUCgGG- -5'
18825 3' -61.3 NC_004683.1 + 11699 0.66 0.480264
Target:  5'- gCGACGGgagcgCUGCa---GCGGCAcGCCg -3'
miRNA:   3'- gGCUGCCa----GACGccagCGCCGU-CGGg -5'
18825 3' -61.3 NC_004683.1 + 12113 0.7 0.269595
Target:  5'- uCCGGCGGUagccccgcGCGGgCGCGcUGGCCCg -3'
miRNA:   3'- -GGCUGCCAga------CGCCaGCGCcGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 12934 0.7 0.263181
Target:  5'- gCGAuucCGGUCUGCGaGUaGCGGCcuGCCg -3'
miRNA:   3'- gGCU---GCCAGACGC-CAgCGCCGu-CGGg -5'
18825 3' -61.3 NC_004683.1 + 13359 0.68 0.343834
Target:  5'- uUCGcCGGgcuguagauauccgCUGCGGUCGaCGGCGacGCCg -3'
miRNA:   3'- -GGCuGCCa-------------GACGCCAGC-GCCGU--CGGg -5'
18825 3' -61.3 NC_004683.1 + 13375 0.67 0.378558
Target:  5'- gCGGCGGcacgCUGCcauucaugggccagGGUggccCGCaGGCGGCCCc -3'
miRNA:   3'- gGCUGCCa---GACG--------------CCA----GCG-CCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 14306 0.71 0.232957
Target:  5'- gCGGCaGUgCUGCgGGUCGCGGCcacGCaCCa -3'
miRNA:   3'- gGCUGcCA-GACG-CCAGCGCCGu--CG-GG- -5'
18825 3' -61.3 NC_004683.1 + 14864 0.71 0.227275
Target:  5'- cCCaGACGGUgaUGCGuUCGCGGguGCUg -3'
miRNA:   3'- -GG-CUGCCAg-ACGCcAGCGCCguCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.