miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18825 3' -61.3 NC_004683.1 + 25114 0.68 0.364552
Target:  5'- cCCGGCGGcgUUGcCGGUCcUGGCcGCCg -3'
miRNA:   3'- -GGCUGCCa-GAC-GCCAGcGCCGuCGGg -5'
18825 3' -61.3 NC_004683.1 + 46688 0.69 0.310736
Target:  5'- cCCGACGG---GCGGUaCGUGGC-GCaCCg -3'
miRNA:   3'- -GGCUGCCagaCGCCA-GCGCCGuCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 23693 0.69 0.313642
Target:  5'- gCCGACGGguUCUcgacguuccgccgcgGCGGcaccgGCGGCGGCaCCa -3'
miRNA:   3'- -GGCUGCC--AGA---------------CGCCag---CGCCGUCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 3184 0.69 0.315836
Target:  5'- gCG-CGG-CgGCGGUgagacacgcauugcCGCGGCAGCCg -3'
miRNA:   3'- gGCuGCCaGaCGCCA--------------GCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 42587 0.69 0.320998
Target:  5'- gCGGCGGUCgggGcCGGUCGUccggcugggguggucGGCGaccgcgacgacGCCCg -3'
miRNA:   3'- gGCUGCCAGa--C-GCCAGCG---------------CCGU-----------CGGG- -5'
18825 3' -61.3 NC_004683.1 + 10715 0.69 0.325473
Target:  5'- gCGugGGUCacUGUcuGGUaucggCGCGGCGGgCCa -3'
miRNA:   3'- gGCugCCAG--ACG--CCA-----GCGCCGUCgGG- -5'
18825 3' -61.3 NC_004683.1 + 47584 0.68 0.333033
Target:  5'- gCGACGG-CUGC-GUgGCGGCguucgGGCCg -3'
miRNA:   3'- gGCUGCCaGACGcCAgCGCCG-----UCGGg -5'
18825 3' -61.3 NC_004683.1 + 23040 0.68 0.347751
Target:  5'- cCCGugGGUCggucuCGGugUCGgccugcuCGGCGGCCUg -3'
miRNA:   3'- -GGCugCCAGac---GCC--AGC-------GCCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 46008 0.68 0.364552
Target:  5'- uUCGGCGaGgugCUGCccgaCGCGGCGGCCg -3'
miRNA:   3'- -GGCUGC-Ca--GACGcca-GCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 41398 0.69 0.303561
Target:  5'- cCCGuCGG-CUGgCGG-CGUGGCugguguGGCCCu -3'
miRNA:   3'- -GGCuGCCaGAC-GCCaGCGCCG------UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 21572 0.69 0.296513
Target:  5'- gCGGCGGUg-GCGGgCGCGGCAuGaucaCCa -3'
miRNA:   3'- gGCUGCCAgaCGCCaGCGCCGU-Cg---GG- -5'
18825 3' -61.3 NC_004683.1 + 21943 0.7 0.276134
Target:  5'- cCCGGCGGUg-GCGG--GCGGCcGCCg -3'
miRNA:   3'- -GGCUGCCAgaCGCCagCGCCGuCGGg -5'
18825 3' -61.3 NC_004683.1 + 21694 0.73 0.155351
Target:  5'- aCCGGggUGGUCggUGCGGguggCGCuGGCAGCgCCg -3'
miRNA:   3'- -GGCU--GCCAG--ACGCCa---GCG-CCGUCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 2741 0.73 0.172225
Target:  5'- aCgGAUGGUgCgcgGCGGcCGCGGCgAGCUCg -3'
miRNA:   3'- -GgCUGCCA-Ga--CGCCaGCGCCG-UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 6950 0.72 0.19909
Target:  5'- aCUGGCGG-CggGCGGUgGUgcagcucgucggccGGCGGCCCa -3'
miRNA:   3'- -GGCUGCCaGa-CGCCAgCG--------------CCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 20022 0.72 0.205708
Target:  5'- -gGGCGGUg-GUGGUCGCGGcCAGaCCg -3'
miRNA:   3'- ggCUGCCAgaCGCCAGCGCC-GUCgGG- -5'
18825 3' -61.3 NC_004683.1 + 14864 0.71 0.227275
Target:  5'- cCCaGACGGUgaUGCGuUCGCGGguGCUg -3'
miRNA:   3'- -GG-CUGCCAg-ACGCcAGCGCCguCGGg -5'
18825 3' -61.3 NC_004683.1 + 47416 0.71 0.232957
Target:  5'- gCGGauGUC-GCGG-CGCGGCAGCgCa -3'
miRNA:   3'- gGCUgcCAGaCGCCaGCGCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 50668 0.71 0.238174
Target:  5'- uCCGAgcuccaccaggcCGGUCUGCuguggcgcuacgaGGUCGaCGGCA-CCCg -3'
miRNA:   3'- -GGCU------------GCCAGACG-------------CCAGC-GCCGUcGGG- -5'
18825 3' -61.3 NC_004683.1 + 26333 0.7 0.275475
Target:  5'- aCCGGCGcuGUCgGCGGUgcgaggcCGCGuuGGCCCu -3'
miRNA:   3'- -GGCUGC--CAGaCGCCA-------GCGCcgUCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.