miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18825 3' -61.3 NC_004683.1 + 43579 1.11 0.000235
Target:  5'- gCCGACGGUCUGCGGUCGCGGCAGCCCc -3'
miRNA:   3'- -GGCUGCCAGACGCCAGCGCCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 24796 0.82 0.036103
Target:  5'- gUCGACGcGggcgUUGCGGUCGCGGCGGCgCg -3'
miRNA:   3'- -GGCUGC-Ca---GACGCCAGCGCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 41024 0.77 0.079987
Target:  5'- gCCGACGGgcaacgGCGG-CGCGGuCAGCUCg -3'
miRNA:   3'- -GGCUGCCaga---CGCCaGCGCC-GUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 37058 0.77 0.079987
Target:  5'- cCCGGCGGg--GCGGUUcggGCGGCGauGCCCa -3'
miRNA:   3'- -GGCUGCCagaCGCCAG---CGCCGU--CGGG- -5'
18825 3' -61.3 NC_004683.1 + 30845 0.75 0.113368
Target:  5'- gCCGACGGUgCgccggUGCGGUCGaCaGCGGCCg -3'
miRNA:   3'- -GGCUGCCA-G-----ACGCCAGC-GcCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 21694 0.73 0.155351
Target:  5'- aCCGGggUGGUCggUGCGGguggCGCuGGCAGCgCCg -3'
miRNA:   3'- -GGCU--GCCAG--ACGCCa---GCG-CCGUCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 44427 0.73 0.159423
Target:  5'- gCCGuCGGcUUGaCGGUCGaCGGCAGCgCg -3'
miRNA:   3'- -GGCuGCCaGAC-GCCAGC-GCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 2741 0.73 0.172225
Target:  5'- aCgGAUGGUgCgcgGCGGcCGCGGCgAGCUCg -3'
miRNA:   3'- -GgCUGCCA-Ga--CGCCaGCGCCG-UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 40534 0.72 0.181262
Target:  5'- gCCGACacUCUGCGGUgCaugccacggGCGGguGCCCa -3'
miRNA:   3'- -GGCUGccAGACGCCA-G---------CGCCguCGGG- -5'
18825 3' -61.3 NC_004683.1 + 6950 0.72 0.19909
Target:  5'- aCUGGCGG-CggGCGGUgGUgcagcucgucggccGGCGGCCCa -3'
miRNA:   3'- -GGCUGCCaGa-CGCCAgCG--------------CCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 49089 0.72 0.200601
Target:  5'- cCCGGuCGGgcuugagggCgGCGGgaUCGCGGCgGGCCCg -3'
miRNA:   3'- -GGCU-GCCa--------GaCGCC--AGCGCCG-UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 20022 0.72 0.205708
Target:  5'- -gGGCGGUg-GUGGUCGCGGcCAGaCCg -3'
miRNA:   3'- ggCUGCCAgaCGCCAGCGCC-GUCgGG- -5'
18825 3' -61.3 NC_004683.1 + 14864 0.71 0.227275
Target:  5'- cCCaGACGGUgaUGCGuUCGCGGguGCUg -3'
miRNA:   3'- -GG-CUGCCAg-ACGCcAGCGCCguCGGg -5'
18825 3' -61.3 NC_004683.1 + 47416 0.71 0.232957
Target:  5'- gCGGauGUC-GCGG-CGCGGCAGCgCa -3'
miRNA:   3'- gGCUgcCAGaCGCCaGCGCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 14306 0.71 0.232957
Target:  5'- gCGGCaGUgCUGCgGGUCGCGGCcacGCaCCa -3'
miRNA:   3'- gGCUGcCA-GACG-CCAGCGCCGu--CG-GG- -5'
18825 3' -61.3 NC_004683.1 + 50668 0.71 0.238174
Target:  5'- uCCGAgcuccaccaggcCGGUCUGCuguggcgcuacgaGGUCGaCGGCA-CCCg -3'
miRNA:   3'- -GGCU------------GCCAGACG-------------CCAGC-GCCGUcGGG- -5'
18825 3' -61.3 NC_004683.1 + 9577 0.7 0.250725
Target:  5'- uCCGGCGGcaucaaCUGUGGguuCGGCAGCUCc -3'
miRNA:   3'- -GGCUGCCa-----GACGCCagcGCCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 43476 0.7 0.256891
Target:  5'- -aGcCGGaUCgccugGCGGUUGCGGCGccGCCCc -3'
miRNA:   3'- ggCuGCC-AGa----CGCCAGCGCCGU--CGGG- -5'
18825 3' -61.3 NC_004683.1 + 25716 0.7 0.256891
Target:  5'- aCCG-CGaUCgGCGGcagcUCGCGGUAGCUCa -3'
miRNA:   3'- -GGCuGCcAGaCGCC----AGCGCCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 56263 0.7 0.263181
Target:  5'- gCUGACGa--UGCGGgugggCGCGGUGGCCa -3'
miRNA:   3'- -GGCUGCcagACGCCa----GCGCCGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.