miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18844 5' -54.7 NC_004683.1 + 2879 0.66 0.765712
Target:  5'- cGCGCCGAucccugacccgcuGGCCAguuaUCGCGgcaUGucguGGCUGa -3'
miRNA:   3'- -CGUGGCU-------------CCGGU----AGCGUa--ACu---UCGGC- -5'
18844 5' -54.7 NC_004683.1 + 6638 0.66 0.764691
Target:  5'- aCACCGAGGCuCAggcugccaucgaCGCcgUGcuGGCCGc -3'
miRNA:   3'- cGUGGCUCCG-GUa-----------GCGuaACu-UCGGC- -5'
18844 5' -54.7 NC_004683.1 + 30292 0.66 0.756477
Target:  5'- aCACCGGGGCgUAucUCGCAgcucgucagGAacuAGCCGa -3'
miRNA:   3'- cGUGGCUCCG-GU--AGCGUaa-------CU---UCGGC- -5'
18844 5' -54.7 NC_004683.1 + 24963 0.66 0.756477
Target:  5'- aCGCCGAGGCCAcCGacacGAuccGGCCc -3'
miRNA:   3'- cGUGGCUCCGGUaGCguaaCU---UCGGc -5'
18844 5' -54.7 NC_004683.1 + 39600 0.66 0.756477
Target:  5'- gGCACCG-GGUagAUCaGCGacaUGAGGCCGc -3'
miRNA:   3'- -CGUGGCuCCGg-UAG-CGUa--ACUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 31420 0.66 0.746094
Target:  5'- -gACCGcGGCCAggGCGgcGAccaGGCCGa -3'
miRNA:   3'- cgUGGCuCCGGUagCGUaaCU---UCGGC- -5'
18844 5' -54.7 NC_004683.1 + 48808 0.66 0.746094
Target:  5'- -gGCCGcGGCCuUCGCGgccucGgcGCCGa -3'
miRNA:   3'- cgUGGCuCCGGuAGCGUaa---CuuCGGC- -5'
18844 5' -54.7 NC_004683.1 + 56823 0.66 0.746094
Target:  5'- aCGCCGAGGCgCuugcccCGCG-UGAAuGCCGc -3'
miRNA:   3'- cGUGGCUCCG-Gua----GCGUaACUU-CGGC- -5'
18844 5' -54.7 NC_004683.1 + 30349 0.66 0.742956
Target:  5'- cCACCGAccgaagucgaugggGGCggaGUCGCGUucgUGggGCUGa -3'
miRNA:   3'- cGUGGCU--------------CCGg--UAGCGUA---ACuuCGGC- -5'
18844 5' -54.7 NC_004683.1 + 22638 0.66 0.735596
Target:  5'- -uGCCGAGGCCAUCaaGCuccuaAAGaCCGa -3'
miRNA:   3'- cgUGGCUCCGGUAG--CGuaac-UUC-GGC- -5'
18844 5' -54.7 NC_004683.1 + 26308 0.66 0.732425
Target:  5'- cGCACCGAGGCauacaaggaaAUCgaccggcgcugucgGCGgugcGAGGCCGc -3'
miRNA:   3'- -CGUGGCUCCGg---------UAG--------------CGUaa--CUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 24691 0.66 0.724992
Target:  5'- uCAUCGAGGCCAUgGCcgcgcGccGCCGc -3'
miRNA:   3'- cGUGGCUCCGGUAgCGuaa--CuuCGGC- -5'
18844 5' -54.7 NC_004683.1 + 2103 0.66 0.723927
Target:  5'- cGCugCGGugguagucguGGCCAUCGCccUGGugguggcgggcguGGCCGu -3'
miRNA:   3'- -CGugGCU----------CCGGUAGCGuaACU-------------UCGGC- -5'
18844 5' -54.7 NC_004683.1 + 44412 0.67 0.714296
Target:  5'- -uGCCGAGGUCGUUGUc--GAGcGCCGc -3'
miRNA:   3'- cgUGGCUCCGGUAGCGuaaCUU-CGGC- -5'
18844 5' -54.7 NC_004683.1 + 15320 0.67 0.714296
Target:  5'- cGCACCucGAGcGCCAUUGCGa-GAGuGCCa -3'
miRNA:   3'- -CGUGG--CUC-CGGUAGCGUaaCUU-CGGc -5'
18844 5' -54.7 NC_004683.1 + 50312 0.67 0.714296
Target:  5'- cGCGCCGcGGCCAgcacgGCGUcgaUGGcAGCCu -3'
miRNA:   3'- -CGUGGCuCCGGUag---CGUA---ACU-UCGGc -5'
18844 5' -54.7 NC_004683.1 + 2006 0.67 0.703518
Target:  5'- cGCACC--GGCUGUCGagGUgugGGAGCCGu -3'
miRNA:   3'- -CGUGGcuCCGGUAGCg-UAa--CUUCGGC- -5'
18844 5' -54.7 NC_004683.1 + 32037 0.67 0.69267
Target:  5'- uCGCCGcGGGUCGUCaCGUUGGugaucAGCCGc -3'
miRNA:   3'- cGUGGC-UCCGGUAGcGUAACU-----UCGGC- -5'
18844 5' -54.7 NC_004683.1 + 44345 0.67 0.691582
Target:  5'- gGCGCCGcGGCCAggcuggcgacgaaUCGCAc-GAGGuuGu -3'
miRNA:   3'- -CGUGGCuCCGGU-------------AGCGUaaCUUCggC- -5'
18844 5' -54.7 NC_004683.1 + 33863 0.67 0.681764
Target:  5'- cCACCGcAGGCCAUCaa---GGAGCUGg -3'
miRNA:   3'- cGUGGC-UCCGGUAGcguaaCUUCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.