miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18899 3' -53.8 NC_004683.1 + 23832 1.09 0.001394
Target:  5'- aCUUCAGCGGCUACUCCAAGCUCGACGu -3'
miRNA:   3'- -GAAGUCGCCGAUGAGGUUCGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 5677 0.8 0.148591
Target:  5'- -aUCGGCGGCc-CUCC-AGCUCGGCGa -3'
miRNA:   3'- gaAGUCGCCGauGAGGuUCGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 2752 0.77 0.242129
Target:  5'- --gCGGCGGCcGCggCGAGCUCGGCGg -3'
miRNA:   3'- gaaGUCGCCGaUGagGUUCGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 52098 0.74 0.353625
Target:  5'- gUUCGGCGGCgcGCUCCAGGCggcucaUGugGu -3'
miRNA:   3'- gAAGUCGCCGa-UGAGGUUCGa-----GCugC- -5'
18899 3' -53.8 NC_004683.1 + 38477 0.74 0.362227
Target:  5'- gUUguGCaGCgACUCCAGGUUCGGCGu -3'
miRNA:   3'- gAAguCGcCGaUGAGGUUCGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 13113 0.73 0.370974
Target:  5'- --gCGGCGGCUGC-CCGgaggGGCaUCGGCGg -3'
miRNA:   3'- gaaGUCGCCGAUGaGGU----UCG-AGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 44340 0.73 0.398066
Target:  5'- --gCAGCGGCgccGCggCCAGGCUggCGACGa -3'
miRNA:   3'- gaaGUCGCCGa--UGa-GGUUCGA--GCUGC- -5'
18899 3' -53.8 NC_004683.1 + 5371 0.72 0.455886
Target:  5'- --aCGGCGGCUACcuggugccguUCC-AGCUCGAUc -3'
miRNA:   3'- gaaGUCGCCGAUG----------AGGuUCGAGCUGc -5'
18899 3' -53.8 NC_004683.1 + 52183 0.71 0.486442
Target:  5'- -gUCcGUgGGCUugUCC-AGCUCGGCGa -3'
miRNA:   3'- gaAGuCG-CCGAugAGGuUCGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 12568 0.71 0.496842
Target:  5'- aCUUCGGUGGCguaucgACcUCGugcGGCUCGGCGa -3'
miRNA:   3'- -GAAGUCGCCGa-----UGaGGU---UCGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 7491 0.71 0.517935
Target:  5'- --gCAGCGGC-GCaCCGGGCUUGAUGu -3'
miRNA:   3'- gaaGUCGCCGaUGaGGUUCGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 28629 0.7 0.539374
Target:  5'- gUUUGGCGGCcgACggCCGAGaCUUGGCGg -3'
miRNA:   3'- gAAGUCGCCGa-UGa-GGUUC-GAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 47853 0.69 0.59191
Target:  5'- gUUCGGCGGCggugccucgcuUUCCGAGCUUG-CGc -3'
miRNA:   3'- gAAGUCGCCGau---------GAGGUUCGAGCuGC- -5'
18899 3' -53.8 NC_004683.1 + 1700 0.68 0.649675
Target:  5'- --cCGGCGcGCUGCUgCCugaccucaagAAGCUCGGCu -3'
miRNA:   3'- gaaGUCGC-CGAUGA-GG----------UUCGAGCUGc -5'
18899 3' -53.8 NC_004683.1 + 53052 0.68 0.660777
Target:  5'- uCUUCAGCGauGCUGCg-CAGGCU-GGCGa -3'
miRNA:   3'- -GAAGUCGC--CGAUGagGUUCGAgCUGC- -5'
18899 3' -53.8 NC_004683.1 + 35646 0.68 0.660777
Target:  5'- --cCAGCaGCgauaaggaugACUCCAAGCgCGGCGa -3'
miRNA:   3'- gaaGUCGcCGa---------UGAGGUUCGaGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 25178 0.68 0.682889
Target:  5'- -aUCGGCGGCgUGCUCgGGGCcaagGACa -3'
miRNA:   3'- gaAGUCGCCG-AUGAGgUUCGag--CUGc -5'
18899 3' -53.8 NC_004683.1 + 12859 0.67 0.715656
Target:  5'- --aCAGCGGCUcaGCgCCGGucacCUCGACGa -3'
miRNA:   3'- gaaGUCGCCGA--UGaGGUUc---GAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 46766 0.67 0.741339
Target:  5'- uCUUCGGCGGCcuguuccucggcccGCUCacgcgccucGCUCGGCGa -3'
miRNA:   3'- -GAAGUCGCCGa-------------UGAGguu------CGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 28113 0.67 0.747665
Target:  5'- -aUCGauGCGGCUuauuucgagcGCUCCcuGCUCGuCGg -3'
miRNA:   3'- gaAGU--CGCCGA----------UGAGGuuCGAGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.