Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18899 | 3' | -53.8 | NC_004683.1 | + | 1700 | 0.68 | 0.649675 |
Target: 5'- --cCGGCGcGCUGCUgCCugaccucaagAAGCUCGGCu -3' miRNA: 3'- gaaGUCGC-CGAUGA-GG----------UUCGAGCUGc -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 2752 | 0.77 | 0.242129 |
Target: 5'- --gCGGCGGCcGCggCGAGCUCGGCGg -3' miRNA: 3'- gaaGUCGCCGaUGagGUUCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 4685 | 0.66 | 0.808133 |
Target: 5'- uUUCGGCGGCgucugUUCCGguguaggcgucgAGCUCGuGCGc -3' miRNA: 3'- gAAGUCGCCGau---GAGGU------------UCGAGC-UGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 5355 | 0.66 | 0.768425 |
Target: 5'- -cUCGGgGGCggGCUugaucgcgUCGAGCUCGGCc -3' miRNA: 3'- gaAGUCgCCGa-UGA--------GGUUCGAGCUGc -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 5371 | 0.72 | 0.455886 |
Target: 5'- --aCGGCGGCUACcuggugccguUCC-AGCUCGAUc -3' miRNA: 3'- gaaGUCGCCGAUG----------AGGuUCGAGCUGc -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 5498 | 0.66 | 0.809089 |
Target: 5'- -cUCGGCGGCcgUGCaguggagcugggacgCCGAGUUCGAgGa -3' miRNA: 3'- gaAGUCGCCG--AUGa--------------GGUUCGAGCUgC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 5677 | 0.8 | 0.148591 |
Target: 5'- -aUCGGCGGCc-CUCC-AGCUCGGCGa -3' miRNA: 3'- gaAGUCGCCGauGAGGuUCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 6612 | 0.66 | 0.798461 |
Target: 5'- --gCAGCGGCccaUCgCGaucAGCUCGGCGc -3' miRNA: 3'- gaaGUCGCCGaugAG-GU---UCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 7491 | 0.71 | 0.517935 |
Target: 5'- --gCAGCGGC-GCaCCGGGCUUGAUGu -3' miRNA: 3'- gaaGUCGCCGaUGaGGUUCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 12568 | 0.71 | 0.496842 |
Target: 5'- aCUUCGGUGGCguaucgACcUCGugcGGCUCGGCGa -3' miRNA: 3'- -GAAGUCGCCGa-----UGaGGU---UCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 12859 | 0.67 | 0.715656 |
Target: 5'- --aCAGCGGCUcaGCgCCGGucacCUCGACGa -3' miRNA: 3'- gaaGUCGCCGA--UGaGGUUc---GAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 13113 | 0.73 | 0.370974 |
Target: 5'- --gCGGCGGCUGC-CCGgaggGGCaUCGGCGg -3' miRNA: 3'- gaaGUCGCCGAUGaGGU----UCG-AGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 16038 | 0.66 | 0.788611 |
Target: 5'- --aCGGCGGCgcggUC-AGCUCGGCGc -3' miRNA: 3'- gaaGUCGCCGaugaGGuUCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 23832 | 1.09 | 0.001394 |
Target: 5'- aCUUCAGCGGCUACUCCAAGCUCGACGu -3' miRNA: 3'- -GAAGUCGCCGAUGAGGUUCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 25178 | 0.68 | 0.682889 |
Target: 5'- -aUCGGCGGCgUGCUCgGGGCcaagGACa -3' miRNA: 3'- gaAGUCGCCG-AUGAGgUUCGag--CUGc -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 28113 | 0.67 | 0.747665 |
Target: 5'- -aUCGauGCGGCUuauuucgagcGCUCCcuGCUCGuCGg -3' miRNA: 3'- gaAGU--CGCCGA----------UGAGGuuCGAGCuGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 28629 | 0.7 | 0.539374 |
Target: 5'- gUUUGGCGGCcgACggCCGAGaCUUGGCGg -3' miRNA: 3'- gAAGUCGCCGa-UGa-GGUUC-GAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 31341 | 0.66 | 0.768425 |
Target: 5'- -aUCGGCGGCaGCUCgCGguAGCUC-ACa -3' miRNA: 3'- gaAGUCGCCGaUGAG-GU--UCGAGcUGc -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 35646 | 0.68 | 0.660777 |
Target: 5'- --cCAGCaGCgauaaggaugACUCCAAGCgCGGCGa -3' miRNA: 3'- gaaGUCGcCGa---------UGAGGUUCGaGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 37070 | 0.66 | 0.778596 |
Target: 5'- gUUCGGgCGGCgaUGC-CCAGgucaucgauGCUCGGCGg -3' miRNA: 3'- gAAGUC-GCCG--AUGaGGUU---------CGAGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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