miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18911 5' -60.8 NC_004683.1 + 55480 0.67 0.390917
Target:  5'- -cUGCAGCUuguuGACGUacacaccgaacgccaGGCGCGGGCCu -3'
miRNA:   3'- gcACGUCGGc---CUGCA---------------CCGCGUCUGGc -5'
18911 5' -60.8 NC_004683.1 + 12027 0.67 0.39613
Target:  5'- uCGUG-AGCCGGguuucgACGgcaGGCGCuGGCCa -3'
miRNA:   3'- -GCACgUCGGCC------UGCa--CCGCGuCUGGc -5'
18911 5' -60.8 NC_004683.1 + 32885 0.67 0.39613
Target:  5'- --aGCAGCgCGGGCcagcccuUGGCcuGCGGGCCGa -3'
miRNA:   3'- gcaCGUCG-GCCUGc------ACCG--CGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 44133 0.66 0.432006
Target:  5'- aGUaGCGGCCugccgGGACGuUGGCcaGCAGcGCCGc -3'
miRNA:   3'- gCA-CGUCGG-----CCUGC-ACCG--CGUC-UGGC- -5'
18911 5' -60.8 NC_004683.1 + 45532 0.66 0.432006
Target:  5'- aGUGCGGUgaGGGCGgucuUGGUGguGuCCGa -3'
miRNA:   3'- gCACGUCGg-CCUGC----ACCGCguCuGGC- -5'
18911 5' -60.8 NC_004683.1 + 38564 0.66 0.432006
Target:  5'- --cGgGGCagGGAUGUGGCGUAGgugGCCGc -3'
miRNA:   3'- gcaCgUCGg-CCUGCACCGCGUC---UGGC- -5'
18911 5' -60.8 NC_004683.1 + 8425 0.66 0.449698
Target:  5'- aGUGCAGCCcGACGUuugugacGGUGCcGGCg- -3'
miRNA:   3'- gCACGUCGGcCUGCA-------CCGCGuCUGgc -5'
18911 5' -60.8 NC_004683.1 + 3397 0.66 0.468745
Target:  5'- gGUGCGGCCGG-CGUcugccgcGGCGUu-GCCc -3'
miRNA:   3'- gCACGUCGGCCuGCA-------CCGCGucUGGc -5'
18911 5' -60.8 NC_004683.1 + 36127 0.67 0.390917
Target:  5'- --cGCGGCCGGugGcGGUcacgaaacugacccgGguGACCGc -3'
miRNA:   3'- gcaCGUCGGCCugCaCCG---------------CguCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 9439 0.67 0.378927
Target:  5'- uCGUGCAGCCaGGGauca-CGCAGAUCGg -3'
miRNA:   3'- -GCACGUCGG-CCUgcaccGCGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 10515 0.67 0.370516
Target:  5'- uCG-GCGGCCGGACGgaacagcGGCuccaAGACCu -3'
miRNA:   3'- -GCaCGUCGGCCUGCa------CCGcg--UCUGGc -5'
18911 5' -60.8 NC_004683.1 + 479 0.72 0.182622
Target:  5'- gGUGCGGCCGGGCau-GCGUcgGGACCu -3'
miRNA:   3'- gCACGUCGGCCUGcacCGCG--UCUGGc -5'
18911 5' -60.8 NC_004683.1 + 15658 0.72 0.192285
Target:  5'- cCGU-CAGCCuGGGCGggUGGCGCggugAGGCCGg -3'
miRNA:   3'- -GCAcGUCGG-CCUGC--ACCGCG----UCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 6011 0.72 0.197283
Target:  5'- gGUGCGGCCGGAgCGcUGuGCGC-GACgGg -3'
miRNA:   3'- gCACGUCGGCCU-GC-AC-CGCGuCUGgC- -5'
18911 5' -60.8 NC_004683.1 + 15064 0.71 0.235517
Target:  5'- uGUGCAGCC-GAUGccggaUGGCGUAGACg- -3'
miRNA:   3'- gCACGUCGGcCUGC-----ACCGCGUCUGgc -5'
18911 5' -60.8 NC_004683.1 + 7617 0.7 0.24146
Target:  5'- gGUGCAGgggcaCCGGccguCGUGGUGCGGGCa- -3'
miRNA:   3'- gCACGUC-----GGCCu---GCACCGCGUCUGgc -5'
18911 5' -60.8 NC_004683.1 + 14810 0.7 0.27307
Target:  5'- gCGUGaauGGUCGGGCGgacGGaccgccaGCAGACCGg -3'
miRNA:   3'- -GCACg--UCGGCCUGCa--CCg------CGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 12677 0.69 0.286615
Target:  5'- gGUGC--CCGGGCGaucgucGGCGCGGAUCGc -3'
miRNA:   3'- gCACGucGGCCUGCa-----CCGCGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 9099 0.68 0.337382
Target:  5'- uCGUGCAGCCcgugacgGGAuuccaUGUGGCGuCGGuCCa -3'
miRNA:   3'- -GCACGUCGG-------CCU-----GCACCGC-GUCuGGc -5'
18911 5' -60.8 NC_004683.1 + 32708 0.66 0.469708
Target:  5'- --cGCGGCguaGGacucgGCGUaGGCGCGGGCCc -3'
miRNA:   3'- gcaCGUCGg--CC-----UGCA-CCGCGUCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.