miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18911 5' -60.8 NC_004683.1 + 32506 1.09 0.000349
Target:  5'- uCGUGCAGCCGGACGUGGCGCAGACCGg -3'
miRNA:   3'- -GCACGUCGGCCUGCACCGCGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 28401 0.66 0.422858
Target:  5'- --cGCAGCCGG----GGCGCGGGCgGu -3'
miRNA:   3'- gcaCGUCGGCCugcaCCGCGUCUGgC- -5'
18911 5' -60.8 NC_004683.1 + 28573 0.66 0.432006
Target:  5'- --aGCAGUCGGcuuugggggagGCGgGGUGuCGGACCGg -3'
miRNA:   3'- gcaCGUCGGCC-----------UGCaCCGC-GUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 412 0.66 0.432006
Target:  5'- -cUGCGGgCGG-UGaUGGCGCAGGCgGu -3'
miRNA:   3'- gcACGUCgGCCuGC-ACCGCGUCUGgC- -5'
18911 5' -60.8 NC_004683.1 + 6953 0.66 0.440336
Target:  5'- --gGCGG-CGGGCgGUGGUGCAGcucgucgGCCGg -3'
miRNA:   3'- gcaCGUCgGCCUG-CACCGCGUC-------UGGC- -5'
18911 5' -60.8 NC_004683.1 + 39632 0.66 0.441267
Target:  5'- --cGCcGCCGGG-GUGGCGacccgaGGGCCGc -3'
miRNA:   3'- gcaCGuCGGCCUgCACCGCg-----UCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 9815 0.66 0.45064
Target:  5'- --aGCAGCUGGAgGaucGGCGCcGAgCCGa -3'
miRNA:   3'- gcaCGUCGGCCUgCa--CCGCGuCU-GGC- -5'
18911 5' -60.8 NC_004683.1 + 19866 0.66 0.469708
Target:  5'- gCG-GCAGCacCGGAacgGUGGCugagauccgGCAGACCa -3'
miRNA:   3'- -GCaCGUCG--GCCUg--CACCG---------CGUCUGGc -5'
18911 5' -60.8 NC_004683.1 + 31500 0.66 0.469708
Target:  5'- --cGCucGCCugGGACcaGGCGUAGGCCGa -3'
miRNA:   3'- gcaCGu-CGG--CCUGcaCCGCGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 34902 0.67 0.39613
Target:  5'- aCGUGCGGCaCGGGCuuGUuugcGGCGCuGGCa- -3'
miRNA:   3'- -GCACGUCG-GCCUG--CA----CCGCGuCUGgc -5'
18911 5' -60.8 NC_004683.1 + 21554 0.67 0.387466
Target:  5'- aCGUGauccuGCUGGGCGgcGGCGguGGCgGg -3'
miRNA:   3'- -GCACgu---CGGCCUGCa-CCGCguCUGgC- -5'
18911 5' -60.8 NC_004683.1 + 40112 0.67 0.378927
Target:  5'- aGacCAGCCGGACGcGGCcGC-GACCa -3'
miRNA:   3'- gCacGUCGGCCUGCaCCG-CGuCUGGc -5'
18911 5' -60.8 NC_004683.1 + 31301 0.75 0.110417
Target:  5'- uGUGCAGCugCGGGcCGUGGCGguGGCgGc -3'
miRNA:   3'- gCACGUCG--GCCU-GCACCGCguCUGgC- -5'
18911 5' -60.8 NC_004683.1 + 2133 0.75 0.113132
Target:  5'- gGUGguGgCGGGCGUGGCcgugcugGCGGGCCu -3'
miRNA:   3'- gCACguCgGCCUGCACCG-------CGUCUGGc -5'
18911 5' -60.8 NC_004683.1 + 48021 0.73 0.160325
Target:  5'- -cUGCAGCCGauGAgGUGGCGCcGGCCc -3'
miRNA:   3'- gcACGUCGGC--CUgCACCGCGuCUGGc -5'
18911 5' -60.8 NC_004683.1 + 43135 0.72 0.182622
Target:  5'- gCGUGCGGCU--GCGUGGC-CGGAUCGa -3'
miRNA:   3'- -GCACGUCGGccUGCACCGcGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 20491 0.72 0.197283
Target:  5'- gGUGgGGCCGGugGUGG---AGGCCGg -3'
miRNA:   3'- gCACgUCGGCCugCACCgcgUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 51122 0.7 0.27307
Target:  5'- --cGCGGCCGGcGCGaagGGcCGCAaGGCCGa -3'
miRNA:   3'- gcaCGUCGGCC-UGCa--CC-GCGU-CUGGC- -5'
18911 5' -60.8 NC_004683.1 + 20017 0.68 0.322775
Target:  5'- cCG-GUGGgCGGugGUGGuCGCggccAGACCGg -3'
miRNA:   3'- -GCaCGUCgGCCugCACC-GCG----UCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 3656 0.68 0.362232
Target:  5'- gCGUGCGGCCcggccgccgcuGGAgaGUGuGCGgCAGGCCc -3'
miRNA:   3'- -GCACGUCGG-----------CCUg-CAC-CGC-GUCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.