Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18911 | 5' | -60.8 | NC_004683.1 | + | 412 | 0.66 | 0.432006 |
Target: 5'- -cUGCGGgCGG-UGaUGGCGCAGGCgGu -3' miRNA: 3'- gcACGUCgGCCuGC-ACCGCGUCUGgC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 479 | 0.72 | 0.182622 |
Target: 5'- gGUGCGGCCGGGCau-GCGUcgGGACCu -3' miRNA: 3'- gCACGUCGGCCUGcacCGCG--UCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 2133 | 0.75 | 0.113132 |
Target: 5'- gGUGguGgCGGGCGUGGCcgugcugGCGGGCCu -3' miRNA: 3'- gCACguCgGCCUGCACCG-------CGUCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 3397 | 0.66 | 0.468745 |
Target: 5'- gGUGCGGCCGG-CGUcugccgcGGCGUu-GCCc -3' miRNA: 3'- gCACGUCGGCCuGCA-------CCGCGucUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 3656 | 0.68 | 0.362232 |
Target: 5'- gCGUGCGGCCcggccgccgcuGGAgaGUGuGCGgCAGGCCc -3' miRNA: 3'- -GCACGUCGG-----------CCUg-CAC-CGC-GUCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 6011 | 0.72 | 0.197283 |
Target: 5'- gGUGCGGCCGGAgCGcUGuGCGC-GACgGg -3' miRNA: 3'- gCACGUCGGCCU-GC-AC-CGCGuCUGgC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 6953 | 0.66 | 0.440336 |
Target: 5'- --gGCGG-CGGGCgGUGGUGCAGcucgucgGCCGg -3' miRNA: 3'- gcaCGUCgGCCUG-CACCGCGUC-------UGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 7617 | 0.7 | 0.24146 |
Target: 5'- gGUGCAGgggcaCCGGccguCGUGGUGCGGGCa- -3' miRNA: 3'- gCACGUC-----GGCCu---GCACCGCGUCUGgc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 8425 | 0.66 | 0.449698 |
Target: 5'- aGUGCAGCCcGACGUuugugacGGUGCcGGCg- -3' miRNA: 3'- gCACGUCGGcCUGCA-------CCGCGuCUGgc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 9099 | 0.68 | 0.337382 |
Target: 5'- uCGUGCAGCCcgugacgGGAuuccaUGUGGCGuCGGuCCa -3' miRNA: 3'- -GCACGUCGG-------CCU-----GCACCGC-GUCuGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 9439 | 0.67 | 0.378927 |
Target: 5'- uCGUGCAGCCaGGGauca-CGCAGAUCGg -3' miRNA: 3'- -GCACGUCGG-CCUgcaccGCGUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 9815 | 0.66 | 0.45064 |
Target: 5'- --aGCAGCUGGAgGaucGGCGCcGAgCCGa -3' miRNA: 3'- gcaCGUCGGCCUgCa--CCGCGuCU-GGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 10515 | 0.67 | 0.370516 |
Target: 5'- uCG-GCGGCCGGACGgaacagcGGCuccaAGACCu -3' miRNA: 3'- -GCaCGUCGGCCUGCa------CCGcg--UCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 12027 | 0.67 | 0.39613 |
Target: 5'- uCGUG-AGCCGGguuucgACGgcaGGCGCuGGCCa -3' miRNA: 3'- -GCACgUCGGCC------UGCa--CCGCGuCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 12677 | 0.69 | 0.286615 |
Target: 5'- gGUGC--CCGGGCGaucgucGGCGCGGAUCGc -3' miRNA: 3'- gCACGucGGCCUGCa-----CCGCGUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 14810 | 0.7 | 0.27307 |
Target: 5'- gCGUGaauGGUCGGGCGgacGGaccgccaGCAGACCGg -3' miRNA: 3'- -GCACg--UCGGCCUGCa--CCg------CGUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 15064 | 0.71 | 0.235517 |
Target: 5'- uGUGCAGCC-GAUGccggaUGGCGUAGACg- -3' miRNA: 3'- gCACGUCGGcCUGC-----ACCGCGUCUGgc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 15658 | 0.72 | 0.192285 |
Target: 5'- cCGU-CAGCCuGGGCGggUGGCGCggugAGGCCGg -3' miRNA: 3'- -GCAcGUCGG-CCUGC--ACCGCG----UCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 19866 | 0.66 | 0.469708 |
Target: 5'- gCG-GCAGCacCGGAacgGUGGCugagauccgGCAGACCa -3' miRNA: 3'- -GCaCGUCG--GCCUg--CACCG---------CGUCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 20017 | 0.68 | 0.322775 |
Target: 5'- cCG-GUGGgCGGugGUGGuCGCggccAGACCGg -3' miRNA: 3'- -GCaCGUCgGCCugCACC-GCG----UCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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