miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18911 5' -60.8 NC_004683.1 + 32506 1.09 0.000349
Target:  5'- uCGUGCAGCCGGACGUGGCGCAGACCGg -3'
miRNA:   3'- -GCACGUCGGCCUGCACCGCGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 31301 0.75 0.110417
Target:  5'- uGUGCAGCugCGGGcCGUGGCGguGGCgGc -3'
miRNA:   3'- gCACGUCG--GCCU-GCACCGCguCUGgC- -5'
18911 5' -60.8 NC_004683.1 + 2133 0.75 0.113132
Target:  5'- gGUGguGgCGGGCGUGGCcgugcugGCGGGCCu -3'
miRNA:   3'- gCACguCgGCCUGCACCG-------CGUCUGGc -5'
18911 5' -60.8 NC_004683.1 + 48021 0.73 0.160325
Target:  5'- -cUGCAGCCGauGAgGUGGCGCcGGCCc -3'
miRNA:   3'- gcACGUCGGC--CUgCACCGCGuCUGGc -5'
18911 5' -60.8 NC_004683.1 + 479 0.72 0.182622
Target:  5'- gGUGCGGCCGGGCau-GCGUcgGGACCu -3'
miRNA:   3'- gCACGUCGGCCUGcacCGCG--UCUGGc -5'
18911 5' -60.8 NC_004683.1 + 43135 0.72 0.182622
Target:  5'- gCGUGCGGCU--GCGUGGC-CGGAUCGa -3'
miRNA:   3'- -GCACGUCGGccUGCACCGcGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 15658 0.72 0.192285
Target:  5'- cCGU-CAGCCuGGGCGggUGGCGCggugAGGCCGg -3'
miRNA:   3'- -GCAcGUCGG-CCUGC--ACCGCG----UCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 20491 0.72 0.197283
Target:  5'- gGUGgGGCCGGugGUGG---AGGCCGg -3'
miRNA:   3'- gCACgUCGGCCugCACCgcgUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 6011 0.72 0.197283
Target:  5'- gGUGCGGCCGGAgCGcUGuGCGC-GACgGg -3'
miRNA:   3'- gCACGUCGGCCU-GC-AC-CGCGuCUGgC- -5'
18911 5' -60.8 NC_004683.1 + 15064 0.71 0.235517
Target:  5'- uGUGCAGCC-GAUGccggaUGGCGUAGACg- -3'
miRNA:   3'- gCACGUCGGcCUGC-----ACCGCGUCUGgc -5'
18911 5' -60.8 NC_004683.1 + 7617 0.7 0.24146
Target:  5'- gGUGCAGgggcaCCGGccguCGUGGUGCGGGCa- -3'
miRNA:   3'- gCACGUC-----GGCCu---GCACCGCGUCUGgc -5'
18911 5' -60.8 NC_004683.1 + 51122 0.7 0.27307
Target:  5'- --cGCGGCCGGcGCGaagGGcCGCAaGGCCGa -3'
miRNA:   3'- gcaCGUCGGCC-UGCa--CC-GCGU-CUGGC- -5'
18911 5' -60.8 NC_004683.1 + 14810 0.7 0.27307
Target:  5'- gCGUGaauGGUCGGGCGgacGGaccgccaGCAGACCGg -3'
miRNA:   3'- -GCACg--UCGGCCUGCa--CCg------CGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 12677 0.69 0.286615
Target:  5'- gGUGC--CCGGGCGaucgucGGCGCGGAUCGc -3'
miRNA:   3'- gCACGucGGCCUGCa-----CCGCGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 20017 0.68 0.322775
Target:  5'- cCG-GUGGgCGGugGUGGuCGCggccAGACCGg -3'
miRNA:   3'- -GCaCGUCgGCCugCACC-GCG----UCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 9099 0.68 0.337382
Target:  5'- uCGUGCAGCCcgugacgGGAuuccaUGUGGCGuCGGuCCa -3'
miRNA:   3'- -GCACGUCGG-------CCU-----GCACCGC-GUCuGGc -5'
18911 5' -60.8 NC_004683.1 + 3656 0.68 0.362232
Target:  5'- gCGUGCGGCCcggccgccgcuGGAgaGUGuGCGgCAGGCCc -3'
miRNA:   3'- -GCACGUCGG-----------CCUg-CAC-CGC-GUCUGGc -5'
18911 5' -60.8 NC_004683.1 + 10515 0.67 0.370516
Target:  5'- uCG-GCGGCCGGACGgaacagcGGCuccaAGACCu -3'
miRNA:   3'- -GCaCGUCGGCCUGCa------CCGcg--UCUGGc -5'
18911 5' -60.8 NC_004683.1 + 9439 0.67 0.378927
Target:  5'- uCGUGCAGCCaGGGauca-CGCAGAUCGg -3'
miRNA:   3'- -GCACGUCGG-CCUgcaccGCGUCUGGC- -5'
18911 5' -60.8 NC_004683.1 + 40112 0.67 0.378927
Target:  5'- aGacCAGCCGGACGcGGCcGC-GACCa -3'
miRNA:   3'- gCacGUCGGCCUGCaCCG-CGuCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.