miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18940 3' -60.8 NC_004683.1 + 52954 0.69 0.277079
Target:  5'- cUCGCGCAcgUGCgUGaGGUGGCCagaaagaagcgcaGGCg -3'
miRNA:   3'- -AGCGCGUuaGCG-GCaCCACCGGg------------CCG- -5'
18940 3' -60.8 NC_004683.1 + 47323 0.69 0.279777
Target:  5'- gUCGaGCAgGUCGCCGUGGUGuucaCCgCGGUc -3'
miRNA:   3'- -AGCgCGU-UAGCGGCACCACc---GG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 25386 0.69 0.285925
Target:  5'- uUUGgGCAGgugguacUCGCUGUGcGccugcaGGCCCGGCa -3'
miRNA:   3'- -AGCgCGUU-------AGCGGCAC-Ca-----CCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 25647 0.69 0.286615
Target:  5'- cCGC-CGAUCGCgGUGGcGGUCCuGCc -3'
miRNA:   3'- aGCGcGUUAGCGgCACCaCCGGGcCG- -5'
18940 3' -60.8 NC_004683.1 + 12616 0.69 0.293583
Target:  5'- cUCGUGCGauucGUCGCCagccUGGCCgCGGCg -3'
miRNA:   3'- -AGCGCGU----UAGCGGcaccACCGG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 55512 0.69 0.300683
Target:  5'- aCGUGCAAUgGgUGUGGUGcGUCgaCGGCa -3'
miRNA:   3'- aGCGCGUUAgCgGCACCAC-CGG--GCCG- -5'
18940 3' -60.8 NC_004683.1 + 24482 0.69 0.307186
Target:  5'- -aGcCGaCGAUCGCCGcGGUGGCCucgucgaagacacCGGUg -3'
miRNA:   3'- agC-GC-GUUAGCGGCaCCACCGG-------------GCCG- -5'
18940 3' -60.8 NC_004683.1 + 2116 0.69 0.307186
Target:  5'- gUCGUgGCcAUCGCCcugGUGGUGGCgggcguggccgugCUGGCg -3'
miRNA:   3'- -AGCG-CGuUAGCGG---CACCACCG-------------GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 22658 0.69 0.307915
Target:  5'- aCGCGCGugCGCCGaGGUGaucaccgcGCuuGGCa -3'
miRNA:   3'- aGCGCGUuaGCGGCaCCAC--------CGggCCG- -5'
18940 3' -60.8 NC_004683.1 + 51647 0.69 0.315279
Target:  5'- gUCGCGC---UGCCGggguucguUGGUGGCCaGGUc -3'
miRNA:   3'- -AGCGCGuuaGCGGC--------ACCACCGGgCCG- -5'
18940 3' -60.8 NC_004683.1 + 6364 0.69 0.315279
Target:  5'- aCGUGCcc-CG-CGUGGUGcGcCCCGGCg -3'
miRNA:   3'- aGCGCGuuaGCgGCACCAC-C-GGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 18175 0.69 0.315279
Target:  5'- aUCGUGCcgaucugauaGGUgGCCGUGGU-GCCCgccggGGCg -3'
miRNA:   3'- -AGCGCG----------UUAgCGGCACCAcCGGG-----CCG- -5'
18940 3' -60.8 NC_004683.1 + 47148 0.68 0.330403
Target:  5'- cUCGaCGuCGAUCGUCG-GGUGG-CCGuGCa -3'
miRNA:   3'- -AGC-GC-GUUAGCGGCaCCACCgGGC-CG- -5'
18940 3' -60.8 NC_004683.1 + 6653 0.68 0.330403
Target:  5'- cUGC-CAucgaCGCCGUGcUGGCCgCGGCg -3'
miRNA:   3'- aGCGcGUua--GCGGCACcACCGG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 8153 0.68 0.330403
Target:  5'- aCGCGCucggCGCCGaGGccgcgaaGGCCgCGGCc -3'
miRNA:   3'- aGCGCGuua-GCGGCaCCa------CCGG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 13115 0.68 0.333492
Target:  5'- -gGCGUugaaucccacccggaAGUCGCCG-GGgccaccgGcGCCCGGCa -3'
miRNA:   3'- agCGCG---------------UUAGCGGCaCCa------C-CGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 55171 0.68 0.338164
Target:  5'- -aGcCGCAuacGUCGCCGUagcggaacgaGGUGaGgCCGGCg -3'
miRNA:   3'- agC-GCGU---UAGCGGCA----------CCAC-CgGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 37273 0.68 0.338164
Target:  5'- gCGCGCAAaCGCCGgauugucuuggugGGUgcggagcgauugcgcGGCgCGGCg -3'
miRNA:   3'- aGCGCGUUaGCGGCa------------CCA---------------CCGgGCCG- -5'
18940 3' -60.8 NC_004683.1 + 23704 0.68 0.346056
Target:  5'- cUCGaCGUuc-CGCCGcGGcGGCaCCGGCg -3'
miRNA:   3'- -AGC-GCGuuaGCGGCaCCaCCG-GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 34049 0.68 0.346056
Target:  5'- cUCGCGCca-CGCUGcaggcccaUGauGUGGUCCGGCa -3'
miRNA:   3'- -AGCGCGuuaGCGGC--------AC--CACCGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.