miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18940 3' -60.8 NC_004683.1 + 55512 0.69 0.300683
Target:  5'- aCGUGCAAUgGgUGUGGUGcGUCgaCGGCa -3'
miRNA:   3'- aGCGCGUUAgCgGCACCAC-CGG--GCCG- -5'
18940 3' -60.8 NC_004683.1 + 55171 0.68 0.338164
Target:  5'- -aGcCGCAuacGUCGCCGUagcggaacgaGGUGaGgCCGGCg -3'
miRNA:   3'- agC-GCGU---UAGCGGCA----------CCAC-CgGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 54065 0.67 0.404918
Target:  5'- -aGCGCGAcggCGCCuccgcGGUGaGCuuGGCg -3'
miRNA:   3'- agCGCGUUa--GCGGca---CCAC-CGggCCG- -5'
18940 3' -60.8 NC_004683.1 + 53627 0.66 0.460122
Target:  5'- -gGCGCGAUcaggccCGCCGcGaccUGGCCgCGGCu -3'
miRNA:   3'- agCGCGUUA------GCGGCaCc--ACCGG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 52954 0.69 0.277079
Target:  5'- cUCGCGCAcgUGCgUGaGGUGGCCagaaagaagcgcaGGCg -3'
miRNA:   3'- -AGCGCGUuaGCG-GCaCCACCGGg------------CCG- -5'
18940 3' -60.8 NC_004683.1 + 52177 0.85 0.02135
Target:  5'- gUUGCGCGAUCuGCCGUGGUGGCUCGa- -3'
miRNA:   3'- -AGCGCGUUAG-CGGCACCACCGGGCcg -5'
18940 3' -60.8 NC_004683.1 + 51882 0.68 0.354079
Target:  5'- cCGCGCGAU--CCGUGaUGGCgCCGGa -3'
miRNA:   3'- aGCGCGUUAgcGGCACcACCG-GGCCg -5'
18940 3' -60.8 NC_004683.1 + 51647 0.69 0.315279
Target:  5'- gUCGCGC---UGCCGggguucguUGGUGGCCaGGUc -3'
miRNA:   3'- -AGCGCGuuaGCGGC--------ACCACCGGgCCG- -5'
18940 3' -60.8 NC_004683.1 + 51210 0.71 0.218419
Target:  5'- -aGCGCGAgCGCCccuGUGGcgucgaacgGGCUCGGCa -3'
miRNA:   3'- agCGCGUUaGCGG---CACCa--------CCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 47475 0.7 0.27307
Target:  5'- aCGCGUcGUCacguguggGCCGUGGaGGCC-GGCa -3'
miRNA:   3'- aGCGCGuUAG--------CGGCACCaCCGGgCCG- -5'
18940 3' -60.8 NC_004683.1 + 47323 0.69 0.279777
Target:  5'- gUCGaGCAgGUCGCCGUGGUGuucaCCgCGGUc -3'
miRNA:   3'- -AGCgCGU-UAGCGGCACCACc---GG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 47284 0.71 0.235517
Target:  5'- cUCGCGCG---GCCGguggGGUgaccgcguugccGGCCUGGCg -3'
miRNA:   3'- -AGCGCGUuagCGGCa---CCA------------CCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 47148 0.68 0.330403
Target:  5'- cUCGaCGuCGAUCGUCG-GGUGG-CCGuGCa -3'
miRNA:   3'- -AGC-GC-GUUAGCGGCaCCACCgGGC-CG- -5'
18940 3' -60.8 NC_004683.1 + 44845 1.1 0.000277
Target:  5'- cUCGCGCAAUCGCCGUGGUGGCCCGGCc -3'
miRNA:   3'- -AGCGCGUUAGCGGCACCACCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 44101 0.67 0.39613
Target:  5'- --aCGCGAUCGUCGaGGUGa-CCGGCg -3'
miRNA:   3'- agcGCGUUAGCGGCaCCACcgGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 43167 0.66 0.45064
Target:  5'- -aGCGCGAccucggccUCGCCGUcaGGauUGGCgaagaucgggCCGGCu -3'
miRNA:   3'- agCGCGUU--------AGCGGCA--CC--ACCG----------GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 41400 0.67 0.387466
Target:  5'- gUCGaCGCcGUCaGCCuGggcgGGUGGCgCGGUg -3'
miRNA:   3'- -AGC-GCGuUAG-CGG-Ca---CCACCGgGCCG- -5'
18940 3' -60.8 NC_004683.1 + 41045 0.68 0.362232
Target:  5'- gCGCGCGgccagGUCGgCGUGGccgacgGGCaaCGGCg -3'
miRNA:   3'- aGCGCGU-----UAGCgGCACCa-----CCGg-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 40479 0.66 0.441267
Target:  5'- gCGUGCAcacCGCCGagggGGUGaGCgCCGGa -3'
miRNA:   3'- aGCGCGUua-GCGGCa---CCAC-CG-GGCCg -5'
18940 3' -60.8 NC_004683.1 + 40295 0.7 0.266493
Target:  5'- gCGCGCuggcAUCGCCGaGGgcaucGCCgCGGCg -3'
miRNA:   3'- aGCGCGu---UAGCGGCaCCac---CGG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.