miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18940 3' -60.8 NC_004683.1 + 35370 0.72 0.177492
Target:  5'- uUC-CGCAAUCGCCaaGGUGGCgacgaguCCGGUa -3'
miRNA:   3'- -AGcGCGUUAGCGGcaCCACCG-------GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 33666 0.66 0.45064
Target:  5'- -gGCuCAAUCGCC-UGGUGGagaCCgaGGCa -3'
miRNA:   3'- agCGcGUUAGCGGcACCACCg--GG--CCG- -5'
18940 3' -60.8 NC_004683.1 + 10139 0.66 0.469708
Target:  5'- aUCGaC-CAGUCGCCGccgcGGccgaacGGCUCGGCg -3'
miRNA:   3'- -AGC-GcGUUAGCGGCa---CCa-----CCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 4892 0.66 0.473571
Target:  5'- -gGCGCGAaacuccucguucuccUCGuCCGUGGgcuuguccaGCUCGGCg -3'
miRNA:   3'- agCGCGUU---------------AGC-GGCACCac-------CGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 37441 0.7 0.27307
Target:  5'- cUGUGCuuGAUaCGCCGaUGGgucaacgGGCCUGGCu -3'
miRNA:   3'- aGCGCG--UUA-GCGGC-ACCa------CCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 25386 0.69 0.285925
Target:  5'- uUUGgGCAGgugguacUCGCUGUGcGccugcaGGCCCGGCa -3'
miRNA:   3'- -AGCgCGUU-------AGCGGCAC-Ca-----CCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 18175 0.69 0.315279
Target:  5'- aUCGUGCcgaucugauaGGUgGCCGUGGU-GCCCgccggGGCg -3'
miRNA:   3'- -AGCGCG----------UUAgCGGCACCAcCGGG-----CCG- -5'
18940 3' -60.8 NC_004683.1 + 47148 0.68 0.330403
Target:  5'- cUCGaCGuCGAUCGUCG-GGUGG-CCGuGCa -3'
miRNA:   3'- -AGC-GC-GUUAGCGGCaCCACCgGGC-CG- -5'
18940 3' -60.8 NC_004683.1 + 8112 0.68 0.346056
Target:  5'- gUCGCGC--UCGaCCGcGGUGcGCaucaCCGGCu -3'
miRNA:   3'- -AGCGCGuuAGC-GGCaCCAC-CG----GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 43167 0.66 0.45064
Target:  5'- -aGCGCGAccucggccUCGCCGUcaGGauUGGCgaagaucgggCCGGCu -3'
miRNA:   3'- agCGCGUU--------AGCGGCA--CC--ACCG----------GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 41045 0.68 0.362232
Target:  5'- gCGCGCGgccagGUCGgCGUGGccgacgGGCaaCGGCg -3'
miRNA:   3'- aGCGCGU-----UAGCgGCACCa-----CCGg-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 55171 0.68 0.338164
Target:  5'- -aGcCGCAuacGUCGCCGUagcggaacgaGGUGaGgCCGGCg -3'
miRNA:   3'- agC-GCGU---UAGCGGCA----------CCAC-CgGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 15169 0.72 0.197283
Target:  5'- cUUGCGCAccgaUGCUGgGGUGGCCUGGg -3'
miRNA:   3'- -AGCGCGUua--GCGGCaCCACCGGGCCg -5'
18940 3' -60.8 NC_004683.1 + 41400 0.67 0.387466
Target:  5'- gUCGaCGCcGUCaGCCuGggcgGGUGGCgCGGUg -3'
miRNA:   3'- -AGC-GCGuUAG-CGG-Ca---CCACCGgGCCG- -5'
18940 3' -60.8 NC_004683.1 + 12738 0.71 0.207618
Target:  5'- cCGCGCuGAUCGCCGacagcgGGCCCaGCa -3'
miRNA:   3'- aGCGCG-UUAGCGGCacca--CCGGGcCG- -5'
18940 3' -60.8 NC_004683.1 + 13115 0.68 0.333492
Target:  5'- -gGCGUugaaucccacccggaAGUCGCCG-GGgccaccgGcGCCCGGCa -3'
miRNA:   3'- agCGCG---------------UUAGCGGCaCCa------C-CGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 54065 0.67 0.404918
Target:  5'- -aGCGCGAcggCGCCuccgcGGUGaGCuuGGCg -3'
miRNA:   3'- agCGCGUUa--GCGGca---CCAC-CGggCCG- -5'
18940 3' -60.8 NC_004683.1 + 12485 0.66 0.468745
Target:  5'- gCGCGCGGUgGCCagcugcugaGcGGUGGCguugcccUCGGCu -3'
miRNA:   3'- aGCGCGUUAgCGG---------CaCCACCG-------GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 47284 0.71 0.235517
Target:  5'- cUCGCGCG---GCCGguggGGUgaccgcguugccGGCCUGGCg -3'
miRNA:   3'- -AGCGCGUuagCGGCa---CCA------------CCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 24482 0.69 0.307186
Target:  5'- -aGcCGaCGAUCGCCGcGGUGGCCucgucgaagacacCGGUg -3'
miRNA:   3'- agC-GC-GUUAGCGGCaCCACCGG-------------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.