Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18953 | 3' | -54.7 | NC_004683.1 | + | 44398 | 0.68 | 0.616054 |
Target: 5'- gAGCGCCugcgacugugACAggUCGGuGCCCGG-GCGa -3' miRNA: 3'- -UCGCGGuaa-------UGU--AGUU-CGGGCCaCGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 53953 | 0.73 | 0.321458 |
Target: 5'- cAGCGCCAgcggaAUCGGGCCCuucucaucgccggGGUGCa -3' miRNA: 3'- -UCGCGGUaaug-UAGUUCGGG-------------CCACGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 8629 | 0.72 | 0.363919 |
Target: 5'- -aCGCCAcgGCgAUCAGG-CCGGUGCGg -3' miRNA: 3'- ucGCGGUaaUG-UAGUUCgGGCCACGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 52328 | 0.69 | 0.552176 |
Target: 5'- uGCGCCuuggUGCcgCGccGGCCCGGgucgccgagGCGg -3' miRNA: 3'- uCGCGGua--AUGuaGU--UCGGGCCa--------CGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 42809 | 0.69 | 0.552176 |
Target: 5'- cGCGCCGgauaccgACAgCGAGcCCCGGUcaGCGu -3' miRNA: 3'- uCGCGGUaa-----UGUaGUUC-GGGCCA--CGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 40304 | 0.69 | 0.552176 |
Target: 5'- cGGCGCgGgccugcucgGCGUCGuaggcAGCCCGG-GCGa -3' miRNA: 3'- -UCGCGgUaa-------UGUAGU-----UCGGGCCaCGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 50758 | 0.68 | 0.596094 |
Target: 5'- uAGCGCCAcaGCAgaccGGCCUGGUGg- -3' miRNA: 3'- -UCGCGGUaaUGUagu-UCGGGCCACgc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 44542 | 0.68 | 0.607174 |
Target: 5'- --gGCCAUcugcACGUCGGGCgCCGGcGCGg -3' miRNA: 3'- ucgCGGUAa---UGUAGUUCG-GGCCaCGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 23927 | 0.68 | 0.607174 |
Target: 5'- aAGuCGCCGUcgACGUCGAGCuuGGaGUa -3' miRNA: 3'- -UC-GCGGUAa-UGUAGUUCGggCCaCGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 1928 | 0.66 | 0.728242 |
Target: 5'- --gGCCAgagGCuUCGAGCCCuGGUGgCGc -3' miRNA: 3'- ucgCGGUaa-UGuAGUUCGGG-CCAC-GC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 47084 | 0.67 | 0.695756 |
Target: 5'- cGCGCCG--GC-UCGGuaCCGGUGUGg -3' miRNA: 3'- uCGCGGUaaUGuAGUUcgGGCCACGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 41723 | 0.67 | 0.684786 |
Target: 5'- gAGCGCCAUUGCGagagugccauguUCGccgcgcGCCCGGauccgGCu -3' miRNA: 3'- -UCGCGGUAAUGU------------AGUu-----CGGGCCa----CGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 26398 | 0.68 | 0.629389 |
Target: 5'- cAGCGCCG----GUCGAuuuccuuguauGCCuCGGUGCGa -3' miRNA: 3'- -UCGCGGUaaugUAGUU-----------CGG-GCCACGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 25364 | 0.66 | 0.717495 |
Target: 5'- uGCGCCug-----CAGGCCCGGcagcGCGg -3' miRNA: 3'- uCGCGGuaauguaGUUCGGGCCa---CGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 9362 | 0.68 | 0.629389 |
Target: 5'- gGGCGC----ACGUCcAGCCCGGgcaUGCGc -3' miRNA: 3'- -UCGCGguaaUGUAGuUCGGGCC---ACGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 4830 | 0.67 | 0.673765 |
Target: 5'- gGGCGUgGaccuCGUC-GGCCCGGUuGCGg -3' miRNA: 3'- -UCGCGgUaau-GUAGuUCGGGCCA-CGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 44357 | 0.66 | 0.717495 |
Target: 5'- cGGCGCgGaucgccGCGUCGAGCCgcgucgucuuCGGUGCc -3' miRNA: 3'- -UCGCGgUaa----UGUAGUUCGG----------GCCACGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 12327 | 0.66 | 0.749429 |
Target: 5'- cAGCGCCgg-GCAUCGGcacGCCgGGcGCu -3' miRNA: 3'- -UCGCGGuaaUGUAGUU---CGGgCCaCGc -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 24766 | 0.67 | 0.662704 |
Target: 5'- cGCgGCCAUggccucgaugACGUCGGGgUUGGUGCGc -3' miRNA: 3'- uCG-CGGUAa---------UGUAGUUCgGGCCACGC- -5' |
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18953 | 3' | -54.7 | NC_004683.1 | + | 24704 | 0.67 | 0.673765 |
Target: 5'- gGGCGCCGgugACGUCGAgguaggagaauGCCgGGUcGCc -3' miRNA: 3'- -UCGCGGUaa-UGUAGUU-----------CGGgCCA-CGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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