miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18957 5' -52.9 NC_004683.1 + 17798 0.66 0.855153
Target:  5'- gAGGUCAACguGACgCCG----CUGGCGc -3'
miRNA:   3'- -UCCAGUUGguUUG-GGCucaaGACCGC- -5'
18957 5' -52.9 NC_004683.1 + 55771 0.66 0.855153
Target:  5'- -cGcCGACCAGaucGCUCGGG-UCUGGCa -3'
miRNA:   3'- ucCaGUUGGUU---UGGGCUCaAGACCGc -5'
18957 5' -52.9 NC_004683.1 + 41004 0.66 0.855152
Target:  5'- cGGUCAGCUcggcGCCCGGGUcggaUCcGGgGa -3'
miRNA:   3'- uCCAGUUGGuu--UGGGCUCA----AGaCCgC- -5'
18957 5' -52.9 NC_004683.1 + 54557 0.66 0.855152
Target:  5'- gAGGUCGaugcuguaGCCGucgccGACCUuGGUUUUGGUGa -3'
miRNA:   3'- -UCCAGU--------UGGU-----UUGGGcUCAAGACCGC- -5'
18957 5' -52.9 NC_004683.1 + 43101 0.66 0.84654
Target:  5'- gAGGUCGcgcuguacuacACCGAcCCCGAGacC-GGCGu -3'
miRNA:   3'- -UCCAGU-----------UGGUUuGGGCUCaaGaCCGC- -5'
18957 5' -52.9 NC_004683.1 + 49069 0.66 0.845666
Target:  5'- uGGGUC-ACCGcGCCgCGGGUUUUcgacuacGGCGu -3'
miRNA:   3'- -UCCAGuUGGUuUGG-GCUCAAGA-------CCGC- -5'
18957 5' -52.9 NC_004683.1 + 42237 0.66 0.840373
Target:  5'- cGGUgAGCCGuaccggaucacguugGAgcggcguCCCGAGUUCgagGGCGu -3'
miRNA:   3'- uCCAgUUGGU---------------UU-------GGGCUCAAGa--CCGC- -5'
18957 5' -52.9 NC_004683.1 + 50704 0.66 0.837696
Target:  5'- gAGGUCGACgGcACCCGucugcuGUUCgugucgUGGUGg -3'
miRNA:   3'- -UCCAGUUGgUuUGGGCu-----CAAG------ACCGC- -5'
18957 5' -52.9 NC_004683.1 + 48487 0.66 0.828629
Target:  5'- cAGGUCAACCgg-UCCGAGaagUGGCu -3'
miRNA:   3'- -UCCAGUUGGuuuGGGCUCaagACCGc -5'
18957 5' -52.9 NC_004683.1 + 52328 0.67 0.809869
Target:  5'- aAGGaCGGCCGAuUCCGGcGUUC-GGCGg -3'
miRNA:   3'- -UCCaGUUGGUUuGGGCU-CAAGaCCGC- -5'
18957 5' -52.9 NC_004683.1 + 656 0.67 0.800196
Target:  5'- cGGUCGACgGcgUUCGAGUUCgUGGUc -3'
miRNA:   3'- uCCAGUUGgUuuGGGCUCAAG-ACCGc -5'
18957 5' -52.9 NC_004683.1 + 24362 0.68 0.749343
Target:  5'- -cGUCGACCGGGCCCauGAGcgC-GGCGu -3'
miRNA:   3'- ucCAGUUGGUUUGGG--CUCaaGaCCGC- -5'
18957 5' -52.9 NC_004683.1 + 13853 0.68 0.738757
Target:  5'- uGGGcUgAGCCGggUUCGGGUUC-GGCGg -3'
miRNA:   3'- -UCC-AgUUGGUuuGGGCUCAAGaCCGC- -5'
18957 5' -52.9 NC_004683.1 + 28433 0.68 0.738757
Target:  5'- gAGGUC-AUCGAugCCGAGcugCgGGCGc -3'
miRNA:   3'- -UCCAGuUGGUUugGGCUCaa-GaCCGC- -5'
18957 5' -52.9 NC_004683.1 + 40053 0.68 0.717267
Target:  5'- cGGUCAACCucGACgCGAGUcaccagCcGGCGa -3'
miRNA:   3'- uCCAGUUGGu-UUGgGCUCAa-----GaCCGC- -5'
18957 5' -52.9 NC_004683.1 + 5214 0.69 0.69543
Target:  5'- gAGGauUCGACCcuGGCCCGucAGUgcCUGGCGa -3'
miRNA:   3'- -UCC--AGUUGGu-UUGGGC--UCAa-GACCGC- -5'
18957 5' -52.9 NC_004683.1 + 1463 0.69 0.67334
Target:  5'- -aGUCAcaGCCAGGCCCGcgc-CUGGCGu -3'
miRNA:   3'- ucCAGU--UGGUUUGGGCucaaGACCGC- -5'
18957 5' -52.9 NC_004683.1 + 14411 0.69 0.67334
Target:  5'- uGGUCcugcgcGCCGAcaaCGGGUUCUGGCGc -3'
miRNA:   3'- uCCAGu-----UGGUUuggGCUCAAGACCGC- -5'
18957 5' -52.9 NC_004683.1 + 6350 0.7 0.617606
Target:  5'- gGGGUCAGCCA---CCGAGgg--GGCGu -3'
miRNA:   3'- -UCCAGUUGGUuugGGCUCaagaCCGC- -5'
18957 5' -52.9 NC_004683.1 + 41613 0.7 0.606458
Target:  5'- uGGUCuuAGCCGGAUCCGGGcgCgcGGCGa -3'
miRNA:   3'- uCCAG--UUGGUUUGGGCUCaaGa-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.